Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01074 ATGGGTTGCTGCTTTAGTGCCAGAATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGAGTTCAAAGGATGGTAACAAAGAAGAGTATGACTCAAATGGTCAAAGCACAGCCTCAACTCCCACTACTGTCCCTCAAACTCCTCGGACCGAGGGTGAGATCTTGAAGTCCTCCAATATGAAGAGCTTCACTTATAGTGAGCTAAAGATTGCTACAAGGAACTTTCGTCCTGATAGTGTGGTGGGTGAAGGTGGGTTTGGTTGTGTATTTAAAGGGTGGATTGATGAGCAGACACTTGCACCGGTTAAACCAGGGACTGGAAAGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGGTTGCAGGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGATGACCAACGGCTTTTGGTATATGAGTTTTTGACCAAGGGCAGTTTGGATAATCATCTATTTAGGAGGGGTTCTTACTTTCAACCACTTTCTTGGAACATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCACAGTGATGAAGCAAAAGTGATATATCGGGACTTCAAAACCTCGAATGTATTGCTTGATTCGGTAAGCAAATCTCATCTCATTGACCTTAGAATTTACTAG 696 0.4397 MGCCFSARIKAESPPRNGLSSKDGNKEEYDSNGQSTASTPTTVPQTPRTEGEILKSSNMKSFTYSELKIATRNFRPDSVVGEGGFGCVFKGWIDEQTLAPVKPGTGKVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDQRLLVYEFLTKGSLDNHLFRRGSYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKTSNVLLDSVSKSHLIDLRIY. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01074 231 PANTHER OS01G0588500 PROTEIN-RELATED 37 228 - -
Seca8g01074 231 ProSiteProfiles Protein kinase domain profile. 74 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01074 231 MobiDBLite consensus disorder prediction 1 51 - -
Seca8g01074 231 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Seca8g01074 231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Seca8g01074 231 Gene3D Transferase(Phosphotransferase) domain 1 160 230 - -
Seca8g01074 231 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Seca8g01074 231 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Seca8g01074 231 MobiDBLite consensus disorder prediction 30 51 - -
Seca8g01074 231 SUPERFAMILY Protein kinase-like (PK-like) 46 227 IPR011009 -
Seca8g01074 231 Pfam Protein tyrosine and serine/threonine kinase 78 221 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01074 Seca-Chr8 15503667 15507612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01074 1 228 Glycoside Hydrolase AT3G07070 39.574 1.77e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca8g01074 PK_Tyr_Ser-Thr 6.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01074 - - gmx:100800735 398.282