Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01071 ATGCGGAGGAACAGTCCAGGATACTACAGTCCTCCTCGGAGAGGATATGGAGGCAGAGGACCTAGTAGGAGGGGATACGGTGGAGGCAGGCGCAGGGAAAACAACAACGGAAGCCTTTTGGTTCGGAACATTCCCCTTGATTGCAGAGCCGAAGAGCTTCGTGTCCCCTTTGAGCGCTTTGGACCTGTTCGTGATGTCTACATACCAAAGGATTATTACTCTGGAGAACCCCGAGGCTTTGCATTTGTGCAGTTTGTGGATTCTTATGATGCCTCAGAGGCCCAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGCAGAGACAAGAAAAAGACCAGAGGAGATGCGCCATAGGTCTAGAGTCAGAGGACCAGCGAGCTATGGGGGGCAAAGGTCTTCTTATTACGGGCGTTCCCGATCTCGTTCAATTACCAGATCACGCTCACCACCTTATCACTCCGGTTCTAGAAATCGATATCGCTCAAGAACCAGGTCCTTTTCTCCTGCCCCAAGACGGCAAATGGACTACTCTGTTTCCCCTAGAAGGCAAGCAGAGCACCCTAGATCACCTAGAGGTCCTCCTGGAGAGCGAGATGATGATCATAAGCGCAGGTCATATTCTCCAGCTTATGGCAATGGTGGGGATCAGAATCAAAGCAATGGATATGCTGAGAAATCTATATACAAGTCTGATGATCGAGGCCAGTGGAAGTCATCCCTACATAGAGCATCAAGGTCACCAATTGGATCTAGATCAAGGTCTCCGGATATGTCACCCAGACGTGGAAGATGA 816 0.4951 MRRNSPGYYSPPRRGYGGRGPSRRGYGGGRRRENNNGSLLVRNIPLDCRAEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMNRQIFAGREISVVVAAETRKRPEEMRHRSRVRGPASYGGQRSSYYGRSRSRSITRSRSPPYHSGSRNRYRSRTRSFSPAPRRQMDYSVSPRRQAEHPRSPRGPPGERDDDHKRRSYSPAYGNGGDQNQSNGYAEKSIYKSDDRGQWKSSLHRASRSPIGSRSRSPDMSPRRGR. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01071 271 MobiDBLite consensus disorder prediction 218 233 - -
Seca8g01071 271 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 30 171 - -
Seca8g01071 271 MobiDBLite consensus disorder prediction 1 36 - -
Seca8g01071 271 SMART rrm1_1 38 111 IPR000504 GO:0003723
Seca8g01071 271 Gene3D - 28 172 IPR012677 -
Seca8g01071 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Seca8g01071 271 MobiDBLite consensus disorder prediction 186 214 - -
Seca8g01071 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Seca8g01071 271 SUPERFAMILY RNA-binding domain, RBD 33 144 IPR035979 GO:0003676
Seca8g01071 271 MobiDBLite consensus disorder prediction 139 180 - -
Seca8g01071 271 MobiDBLite consensus disorder prediction 117 271 - -
Seca8g01071 271 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 37 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01071 Seca-Chr8 15489508 15493378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01071 20 99 Eukaryotic Initiation Factors Gene Family AT3G11400 38.750 9.64e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01071 K12900 - gmx:100804294 363.999