Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01070 ATGGCAATTGGGTTCATGGAGGTTCTGCTGGTGAAAGCAAAGGGTCTTCAAGAAACTGATATCTTTGCTCGTATGGATCCGTATGTTCTGTTGCAATACAAAGGTCAAGAGCGCAAGAGCAGTGTAATTCATGAGGGGGGCAGCAATCCTGTATGGAATGAGAAAATTGTGTTCAGAGTGGAATACCCTGGATCAGGTGACCAATACAAGCTCAACCTGAAAATAATGGACAAGGATGTATTTTCTGCAGATGACTTTGTTGGCCAGGCCACAATCTATGTAAAGGATTTATTAGCAGATGGAGCAGAAAATGGATCAGCTGAGCTTCGTCCTCGCAAGTACAGTGTGGTTCGAGCTGACCAATCTTATTGTGGTGAAATTGAAGTTGGTATAACTTTCACCAGAAAGGAACAGGAATATATGGATGATGATGATATTGGAGGATGGAAGGAAACAGGTAAAATGGACCCCTATGTTCTGATACAATACAAAGGCCAAGAGCAGAGGAGCAGTGTTGCCATTGGCCAAGGCAGAAATCCAATATGGAATGAGAAATTTATGTTTAGAGTAGAACACCCTGGATCAGGCAACAAGTACAAGCTCATCCTCAAAATCATGGACAAGGACACCTTATCTAGGGATGACTTTGTTGGACAAGCCATAATATATGTAGAGGATTTATTGGCACAAGGGGTAGAGAATGGAGGAGCTAAGCTACAGCCTCTCAAGTATAGAGTGGTTCGTGAAAACCAGTCTTATTGTGGTGAAATTACTGTTGGTATCACTTTCACCCCAAAGGTGGAAGACAAATTTATTGAAGAAGAGATAGGAGGATGGAAAGACAGTGACTACTATCTGCCGTAG 864 0.4236 MAIGFMEVLLVKAKGLQETDIFARMDPYVLLQYKGQERKSSVIHEGGSNPVWNEKIVFRVEYPGSGDQYKLNLKIMDKDVFSADDFVGQATIYVKDLLADGAENGSAELRPRKYSVVRADQSYCGEIEVGITFTRKEQEYMDDDDIGGWKETGKMDPYVLIQYKGQEQRSSVAIGQGRNPIWNEKFMFRVEHPGSGNKYKLILKIMDKDTLSRDDFVGQAIIYVEDLLAQGVENGGAKLQPLKYRVVRENQSYCGEITVGITFTPKVEDKFIEEEIGGWKDSDYYLP. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01070 287 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Seca8g01070 287 PANTHER C2 DOMAIN-CONTAINING 3 138 - -
Seca8g01070 287 CDD C2_putative_Elicitor-responsive_gene 4 127 - -
Seca8g01070 287 SMART C2_3c 132 236 IPR000008 -
Seca8g01070 287 SMART C2_3c 5 106 IPR000008 -
Seca8g01070 287 Gene3D C2 domain 3 135 IPR035892 -
Seca8g01070 287 Gene3D C2 domain 142 266 IPR035892 -
Seca8g01070 287 ProSiteProfiles C2 domain profile. 108 237 IPR000008 -
Seca8g01070 287 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 150 267 IPR035892 -
Seca8g01070 287 Pfam C2 domain 146 234 IPR000008 -
Seca8g01070 287 Pfam C2 domain 7 105 IPR000008 -
Seca8g01070 287 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 135 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01070 Seca-Chr8 15467664 15487223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01070 156 239 C2H2 Transcription Factor Family AT4G21160 33.333 2.75e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01070 - - csv:101215450 318.161