Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01064 ATGGCAATAGTCAACATCATCACCACTGTTAGCACCTTGACCCTTCTTCTTCTTCTCACCTCAACCGAAGCCAGAATCCCCGGTGTCTACTCCGGCGGGGCATGGCAAAGCGCACACGCCACCTTCTACGGTGGCAGCGACGCCTCCGGCACAATGGGAAAGTTGTTCAATTTTAATTTTTTTTTTTTTGTAGGAGGGGCATGTGGATATGGAAATTTGTATAGCCAAGGGTATGGTGTGAACACTGCAGCACTTAGCACAGCGTTGTTTAACAATGGGTTAAGCTGTGGGGCGTGTTTTGAGATTAAGTGTGCAGATGACCCTAGCTGGTGCCACGCTGGCAGTCCTTCGATATTGATAACCGCCACTAACTTCTGCCCTCCAAACTATGCTCTTCCCAGTGATAATGGAGGATGGTGTAACCCTCCTCGGCCCCACTTCGATCTCGCCATGCCCATGTTCCTTAAGATCGCTGAGTACCGTGCTGGCATCGTCCCTGTTTCTTACCGCCGGGTGCCTTGCAGGAAACAGGGAGGGATGAGGTTCACGATCAACGGTTTCCGTTATTTTAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGACGAGCGTGAAAGGTTCGAAGACTGGGTGGATGAGCATGAGCCGAAACTGGGGTCAGAATTGGCAGTCAAACGCTGTTTTGGTTGGGCAGTCACTGTCGTTCAGGGTCACAGCCAGTGACCGGCGCACTTCCACCTCATGGAACATTGTTCCCTCTAATTGGCAATTTGGACAAACCTTCACTGGCAAGAATTTCAGGGTCTAG 822 0.5109 MAIVNIITTVSTLTLLLLLTSTEARIPGVYSGGAWQSAHATFYGGSDASGTMGKLFNFNFFFFVGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCADDPSWCHAGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIVRTSVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01064 273 FunFam Expansin 179 271 - -
Seca8g01064 273 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Seca8g01064 273 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Seca8g01064 273 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Seca8g01064 273 PRINTS Expansin/Lol pI family signature 162 178 IPR007118 GO:0005576
Seca8g01064 273 CDD DPBB_EXPA_N 35 174 - -
Seca8g01064 273 SUPERFAMILY Barwin-like endoglucanases 34 197 IPR036908 -
Seca8g01064 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 268 IPR007117 -
Seca8g01064 273 PRINTS Expansin signature 254 270 IPR002963 GO:0009664
Seca8g01064 273 PRINTS Expansin signature 118 128 IPR002963 GO:0009664
Seca8g01064 273 PRINTS Expansin signature 178 190 IPR002963 GO:0009664
Seca8g01064 273 PRINTS Expansin signature 190 211 IPR002963 GO:0009664
Seca8g01064 273 PRINTS Expansin signature 77 91 IPR002963 GO:0009664
Seca8g01064 273 PRINTS Expansin signature 137 154 IPR002963 GO:0009664
Seca8g01064 273 PRINTS Expansin signature 225 246 IPR002963 GO:0009664
Seca8g01064 273 PRINTS Expansin signature 104 115 IPR002963 GO:0009664
Seca8g01064 273 PRINTS Expansin signature 154 167 IPR002963 GO:0009664
Seca8g01064 273 PANTHER EXPANSIN-A15 22 271 IPR002963 GO:0009664
Seca8g01064 273 FunFam Expansin 24 175 - -
Seca8g01064 273 SUPERFAMILY PHL pollen allergen 176 268 IPR036749 -
Seca8g01064 273 Gene3D - 180 271 IPR036749 -
Seca8g01064 273 Gene3D - 22 175 IPR036908 -
Seca8g01064 273 Pfam Expansin C-terminal domain 180 257 IPR007117 -
Seca8g01064 273 Pfam Lytic transglycolase 82 169 IPR009009 -
Seca8g01064 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 179 IPR007112 -
Seca8g01064 273 SMART dpbb_1 82 169 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01064 Seca-Chr8 15385630 15388008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01064 13 273 Expansin Gene Family AT2G39700 83.142 1.22e-164 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01064 - - gmx:100809018 496.508