Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01043 ATGCCAAATTGTCCCGATTGTGATAGTGGATTTGTCGAAGAGATTGAAAATCCTCATGTCCATGTAGATGGCCGGCGCCAGAGGTTCCCACCGGCGGCGACCATGTACATGATCGGCCACCGCCATGATCAGAATTCTCGTCCAAATCACCGGAGACATTGCATAAACTCGGGCGGTGGTGACCGTTCACCGTTCAATCCAATCATCATGCTTCGCTCATCAGAGGGAACAAGTCGCGATCCTGGTGGCTTTGAGCTTTTCTATGATGATGGTGTCGGTTCTGGCCTTAGGCCTTTGCCTCCAAGGATGTCAGAGATTCTTTTAGGATCTGGATTTGACAGAGTGATGCAACAAATTTCTAATGTTGAGAACAATGGAGGAGGAATTGGAAGACACGACCAACAACAACCTCCTCCAGCATCAAAAGTCATTGTTGATTCCTTGCCGATAATAAAGATTGATGAGGCCCACATCGCCACGGAATCACATTGTGCCATTTGCAAGGAGCCTTTTGAAATTGGAATCACCGCAAGAGAATTGCCTTGCAAACACATATACCACAATGAATGCATCCTCCCCTGGCTTGCAATTCGCAATTCCTGCCCTGTTTGTCGCCATGAATTGCCTTCAGAACCAAACAACAACACAAATGTAGCATCACCATTAGTTCAGAACCAACAAACAAGTGAGGTAGAGAATGTGGGGTTGACAATTTGGAGGTTACCAGGTGGTGGTTTTGCGGTGGGAAGGTTTTTAGGTGGAAGAAGAAGGGGAGATGGGAGGGAGGTTCCTGTTATTTACACAGAGGTAGATGGTGGATTTAACATTAATGGGGTTGAGCCAATTAGAAGGATTTCTTGGTCAGTTTCATCATCTAGAGGGAGAGGGAATGGTGGTGGGTTGAGAAGAATGTTTAGCAATATGTTTGGTTGTTTTAGAGGTGGTGGAGGAGTTAGGCCTCAACGCTCTATTTCTCCTATAGAATATTCTCAACCCATGAGCTTAAGAAGTAATAGTGTATCTCGTGCCAATGTGGATCCGTCTCCACGTTCTCGTAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGACCATGGTAA 1101 0.4587 MPNCPDCDSGFVEEIENPHVHVDGRRQRFPPAATMYMIGHRHDQNSRPNHRRHCINSGGGDRSPFNPIIMLRSSEGTSRDPGGFELFYDDGVGSGLRPLPPRMSEILLGSGFDRVMQQISNVENNGGGIGRHDQQQPPPASKVIVDSLPIIKIDEAHIATESHCAICKEPFEIGITARELPCKHIYHNECILPWLAIRNSCPVCRHELPSEPNNNTNVASPLVQNQQTSEVENVGLTIWRLPGGGFAVGRFLGGRRRGDGREVPVIYTEVDGGFNINGVEPIRRISWSVSSSRGRGNGGGLRRMFSNMFGCFRGGGGVRPQRSISPIEYSQPMSLRSNSVSRANVDPSPRSRRTWSMDVNSGMRPW. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01043 366 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Seca8g01043 366 Pfam Ring finger domain 163 205 IPR001841 -
Seca8g01043 366 MobiDBLite consensus disorder prediction 335 366 - -
Seca8g01043 366 MobiDBLite consensus disorder prediction 41 66 - -
Seca8g01043 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 211 IPR013083 -
Seca8g01043 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 209 - -
Seca8g01043 366 SMART ring_2 164 204 IPR001841 -
Seca8g01043 366 SUPERFAMILY RING/U-box 144 213 - -
Seca8g01043 366 Pfam Protein of unknown function (DUF1117) 234 325 IPR010543 -
Seca8g01043 366 FunFam E3 ubiquitin-protein ligase RING1-like 129 211 - -
Seca8g01043 366 MobiDBLite consensus disorder prediction 335 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01043 Seca-Chr8 14924223 14928327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01043 96 214 C3H Transcription Factor Family AT5G01980 38.655 3.28e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01043 K11982 - gmx:100807324 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01043 8 14924223 14928327 Seca8g01043 8 14924223 14928327 ECH