Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01028 ATGACGGGGTTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAGTGTGCAAGTGATTGTGTTTTTGCTCCTTACTTCTCCTATGACCAGGCTGCAACTCATTTTGCAGCAGTGCATAAGGTTTATGGTGCTAGTAATGTCTCCAGGCTATTGTCACATCTTCCAATTCAGAACAGAAGTGATGCTGCCATCACTATATCTTATGAAGCCTTGGCTCGCATGCACGATCCTATATATGGTTGTGTTGCTCATATCTATGCATTACAGCAACAGGTTGCCAGCTTGCAAGAGGAGATAGATGTTCTTGGAAGTCTAATGGCAAATTCCACAGTTAGTGCTGTTAACTGTGGCAGTGTACAAGCACCAATGAACTCAAACAATGGAATACAACATCTTTTGCAGCATAATGATGCTACAAGGACTCAATATTATCAAAATCAACTGGCTAATTTTCTTTCACAAGAAGGAAGTGCCACAGTCTACCAAAGTTTTGACTCACAGATGGATGTAGAGCTTCCTAATGCATATGGACTTGAAGAGACTTTATTTGGGGATTCCAACTCCAACCCTTTAGAGAAGTTCCTATCTGGAATTGACCAAGATGTTTTCATGAACCACCCTTGGTTCAAGCATAATGCAGACATAAGGAACTAG 660 0.4152 MTGFGSSCGACKFLRRKCASDCVFAPYFSYDQAATHFAAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMHDPIYGCVAHIYALQQQVASLQEEIDVLGSLMANSTVSAVNCGSVQAPMNSNNGIQHLLQHNDATRTQYYQNQLANFLSQEGSATVYQSFDSQMDVELPNAYGLEETLFGDSNSNPLEKFLSGIDQDVFMNHPWFKHNADIRN. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01028 219 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Seca8g01028 219 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 161 - -
Seca8g01028 219 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01028 Seca-Chr8 14444062 14445311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01028 1 117 AS2 family AT5G06080 70.940 4.06e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g01028 LOB 1.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01028 K13945 - gmx:100787638 323.168