Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01024 ATGGCGAATCGTTGGTGGGCTGGGAACGTGGCTGTGAGACCCTCGGAGCAAAAGGACCCGGAAGAGGATCTGAACCGGGTCGGGTCAAGAAGAGAGCAAGAGTTCATGGATAACAACAACAACGCTACCCCAACCAGCAGCAACAGCAACACCAACGTCACTGGCAGCGGCGGTGGCGACGACGACGACAACAACGAGCGCGATGCTGACGACACCACCCCCGGCGGAGGACGGCGGCCGCGTGGCAGGCCACCGGGGTCGAAGAACAAGCCGAAGCCGCCGGTGGTGATAACGAAGGAGAGCCCCAACGCGCTTCGGAGCCACATCTTGGAAATCAGCAACGGAAGCGACATCGCTGAGTGCATCTCCACCTTCGCCAACCGCCGCCACCGCGGCGTGTCGGTGCTAAGCGGCAGCGGCGTCGTTACCAACGTGACTCTCCGGCAACCGGCGGCTCCTGGTGGGGTGATCACCCTTCAGGGGAGATTCGAGATTCTGTCCCTCTCCGGCGCGTTTCTGCCGGCGCCGTCGCCGCCGGAGGCTACTGGACTGACGGTGTACTTGGCCGGTGGTCAGGGTCAGGTGGTCGGAGGAACAGTGGTGGGGTCATTAGTAGCTTCAGGGCCTGTTATGGTGGTTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGTTACCAATAGATGATGAACAGGAACAAGAGGTGAATGAAAGTGGTGGTGGTGGTGGTGGTGCAAATCCTCCACCTTCTTCTCAGGGTTTAGGGGAACAACAACAACAACAGGTTTCAATGCCAGTTTACAATTTGAATCCTAATTTGCTACCAAATGGTCAAATGCCACATGATGTGTTTTGGGGTCCTCCTTCTCGCCCTCCTCCACCTTCGTTTTGA 891 0.5758 MANRWWAGNVAVRPSEQKDPEEDLNRVGSRREQEFMDNNNNATPTSSNSNTNVTGSGGGDDDDNNERDADDTTPGGGRRPRGRPPGSKNKPKPPVVITKESPNALRSHILEISNGSDIAECISTFANRRHRGVSVLSGSGVVTNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPEATGLTVYLAGGQGQVVGGTVVGSLVASGPVMVVAATFANATYERLPIDDEQEQEVNESGGGGGGANPPPSSQGLGEQQQQQVSMPVYNLNPNLLPNGQMPHDVFWGPPSRPPPPSF. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01024 296 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 231 - -
Seca8g01024 296 Pfam Plants and Prokaryotes Conserved (PCC) domain 106 218 IPR005175 -
Seca8g01024 296 PIRSF ESCAROLA 16 295 IPR014476 GO:0003680
Seca8g01024 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 44 286 IPR014476 GO:0003680
Seca8g01024 296 MobiDBLite consensus disorder prediction 224 296 - -
Seca8g01024 296 FunFam AT-hook motif nuclear-localized protein 105 233 - -
Seca8g01024 296 Gene3D - 105 237 - -
Seca8g01024 296 MobiDBLite consensus disorder prediction 1 102 - -
Seca8g01024 296 MobiDBLite consensus disorder prediction 250 275 - -
Seca8g01024 296 CDD DUF296 106 189 IPR005175 -
Seca8g01024 296 MobiDBLite consensus disorder prediction 34 59 - -
Seca8g01024 296 MobiDBLite consensus disorder prediction 15 33 - -
Seca8g01024 296 ProSiteProfiles PPC domain profile profile. 102 239 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01024 Seca-Chr8 14388187 14389110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01024 78 292 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 62.162 3.08e-75 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01024 - - qsu:112039774 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01024 8 14388187 14389110 Seca8g01024 8 14388187 14389110 ECH
Seca8g01024 8 14388187 14389110 Seca6g02258 6 83606926 83607855 PCT