Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01022 ATGGAGGGATCTCAGTATTGGATGTGGATGAAGAAAAAGCAAATCCTAATGTCACATCTTCAAGTACCAGTTGGAGATCATGGCAACAATTACTCATCATGGGAAGAAAGGGCTTTTGCTGAAGATTCTGCTAGGATGCTTGGTGGGAGCATATGGCCTCCAAGATCTTACTCTTGTTCCTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGTGGTCACATGAATATCCATAGAAGAGACAGAGCTAGGCTCAAACAAAATCTAGCCCTTGATCATCATCACAAAAATGATTTCAAATCATCATCACTAGGTAACCATTTTTCTTCTTCCCAGATAGATTGTTGTCCTAATCCTTGTTCTTCTAGCACTGCAGCAACTACAATTACAACAAGCAGAATCTCACCTTCTAGACCCTCAATTATCTGGGGTAAGCAGGGGTCTCCAAATTCAGAACAAGAAGTGTTAGTCAATGCAAGAGAGGACAATTTTAATGGCTTGGGTTGTAATAATTATGTTGAAACAAGTTTGTCTGTGGGACTCACTTCCATGTTTGGCCAAAAATCACCAATTGTTGCTTGTGGGGACAAAGCCATCATCACTTGTAAAAGACAAAAGACTACTACTACCATTCCTTCTCTGCCTGTTTTTCTCAATCCATGTTCAAATGATCATAGAAGCCTGATCACTCTCCAACCTAAAGAAATCATAGCTGGATTTAACCCTGGAATGGAAGAGTTAGATCTTGAACTCAGGCTAGGGAAACAGCAGAAAGTTAAGTAG 786 0.402 MEGSQYWMWMKKKQILMSHLQVPVGDHGNNYSSWEERAFAEDSARMLGGSIWPPRSYSCSFCKREFRSAQALGGHMNIHRRDRARLKQNLALDHHHKNDFKSSSLGNHFSSSQIDCCPNPCSSSTAATTITTSRISPSRPSIIWGKQGSPNSEQEVLVNAREDNFNGLGCNNYVETSLSVGLTSMFGQKSPIVACGDKAIITCKRQKTTTTIPSLPVFLNPCSNDHRSLITLQPKEIIAGFNPGMEELDLELRLGKQQKVK. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01022 261 PANTHER OS07G0101800 PROTEIN 28 257 - -
Seca8g01022 261 SMART c2h2final6 57 79 IPR013087 -
Seca8g01022 261 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Seca8g01022 261 SUPERFAMILY beta-beta-alpha zinc fingers 54 84 IPR036236 -
Seca8g01022 261 Gene3D Classic Zinc Finger 53 111 - -
Seca8g01022 261 Pfam C2H2-type zinc finger 57 81 - -
Seca8g01022 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01022 Seca-Chr8 14298757 14299542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01022 29 88 C2H2 Transcription Factor Family AT2G37740 78.333 1.88e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g01022 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01022 - - lja:Lj0g3v0352099.1 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01806 2 34897572 34898441 Seca8g01022 8 14298757 14299542 ECH
Seca8g01022 8 14298757 14299542 Seca8g01022 8 14298757 14299542 ECH
Seca8g01022 8 14298757 14299542 Seca8g01022 8 14298757 14299542 PCT