Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g01022 | ATGGAGGGATCTCAGTATTGGATGTGGATGAAGAAAAAGCAAATCCTAATGTCACATCTTCAAGTACCAGTTGGAGATCATGGCAACAATTACTCATCATGGGAAGAAAGGGCTTTTGCTGAAGATTCTGCTAGGATGCTTGGTGGGAGCATATGGCCTCCAAGATCTTACTCTTGTTCCTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGTGGTCACATGAATATCCATAGAAGAGACAGAGCTAGGCTCAAACAAAATCTAGCCCTTGATCATCATCACAAAAATGATTTCAAATCATCATCACTAGGTAACCATTTTTCTTCTTCCCAGATAGATTGTTGTCCTAATCCTTGTTCTTCTAGCACTGCAGCAACTACAATTACAACAAGCAGAATCTCACCTTCTAGACCCTCAATTATCTGGGGTAAGCAGGGGTCTCCAAATTCAGAACAAGAAGTGTTAGTCAATGCAAGAGAGGACAATTTTAATGGCTTGGGTTGTAATAATTATGTTGAAACAAGTTTGTCTGTGGGACTCACTTCCATGTTTGGCCAAAAATCACCAATTGTTGCTTGTGGGGACAAAGCCATCATCACTTGTAAAAGACAAAAGACTACTACTACCATTCCTTCTCTGCCTGTTTTTCTCAATCCATGTTCAAATGATCATAGAAGCCTGATCACTCTCCAACCTAAAGAAATCATAGCTGGATTTAACCCTGGAATGGAAGAGTTAGATCTTGAACTCAGGCTAGGGAAACAGCAGAAAGTTAAGTAG | 786 | 0.402 | MEGSQYWMWMKKKQILMSHLQVPVGDHGNNYSSWEERAFAEDSARMLGGSIWPPRSYSCSFCKREFRSAQALGGHMNIHRRDRARLKQNLALDHHHKNDFKSSSLGNHFSSSQIDCCPNPCSSSTAATTITTSRISPSRPSIIWGKQGSPNSEQEVLVNAREDNFNGLGCNNYVETSLSVGLTSMFGQKSPIVACGDKAIITCKRQKTTTTIPSLPVFLNPCSNDHRSLITLQPKEIIAGFNPGMEELDLELRLGKQQKVK. | 262 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g01022 | 261 | PANTHER | OS07G0101800 PROTEIN | 28 | 257 | - | - | |
Seca8g01022 | 261 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Seca8g01022 | 261 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Seca8g01022 | 261 | SUPERFAMILY | beta-beta-alpha zinc fingers | 54 | 84 | IPR036236 | - | |
Seca8g01022 | 261 | Gene3D | Classic Zinc Finger | 53 | 111 | - | - | |
Seca8g01022 | 261 | Pfam | C2H2-type zinc finger | 57 | 81 | - | - | |
Seca8g01022 | 261 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 84 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g01022 | Seca-Chr8 | 14298757 | 14299542 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g01022 | 29 | 88 | C2H2 Transcription Factor Family | AT2G37740 | 78.333 | 1.88e-27 | 105 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca8g01022 | zf-C2H2_6 | 1.3e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g01022 | - | - | lja:Lj0g3v0352099.1 | 283.108 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca2g01806 | 2 | 34897572 | 34898441 | Seca8g01022 | 8 | 14298757 | 14299542 | ECH | |
Seca8g01022 | 8 | 14298757 | 14299542 | Seca8g01022 | 8 | 14298757 | 14299542 | ECH | |
Seca8g01022 | 8 | 14298757 | 14299542 | Seca8g01022 | 8 | 14298757 | 14299542 | PCT |