Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01020 ATGGACGAGGAGGTACTAAGCTGGAGCCAGAGCAACCAGACCTCAACTTGCAGGTGTGAGCTTCAAACTCCTCACTGTGACACCGTGGGTTCCACCGCCGTCGTCACCGTTGTCACGCCGGAAAAGATTATTGTCTCCAACTGTGGCGATCCCCGTGCCGTTCTTTGCCGGAACGGCGTCGCCATCCCGCTTTCCTCCGATCATAAGCCTGACCGACCCGATGAGTTGGCTCGGATCCAAGACGCGGGTGGGCACGTGATCTATTGGGATGGTCCAAGAGTGCTTGGAGTGTTGGCCATGTCCAGAGCCATAGGGGACAATTATCTGAAGCCGTATGTTATTTTGGAACCGGAGGTGACGGTAACGGAACTGAGTGATGAGGATGAGTGTTTGATTCTTGCGAGTGATGGACTGTGGGACACTGTTCAAAACGACACCGCATGCAAGGTGGTGCGGATGTGTCTTAACGCAGAGAAGCTACCGTCGCCGCCGGGGTCTCCGTCGAGTGACGTGGTGGTCGATGGCTCCGACAAGGCGTGCTTCAACGCTTCCGGTTTGCTGACGAAGTTGGCGTTAGCGAGGCACAATTCGGACAATGTGAGCGTCGTGGTGGTAGATTTGAGGAGAGGTCAACGTCAACCACCACAACAACAATGGAGATTAATTAATGGAATGGGAGATTAA 684 0.5424 MDEEVLSWSQSNQTSTCRCELQTPHCDTVGSTAVVTVVTPEKIIVSNCGDPRAVLCRNGVAIPLSSDHKPDRPDELARIQDAGGHVIYWDGPRVLGVLAMSRAIGDNYLKPYVILEPEVTVTELSDEDECLILASDGLWDTVQNDTACKVVRMCLNAEKLPSPPGSPSSDVVVDGSDKACFNASGLLTKLALARHNSDNVSVVVVDLRRGQRQPPQQQWRLINGMGD. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01020 227 CDD PP2Cc 1 160 IPR001932 -
Seca8g01020 227 FunFam Protein phosphatase 2C 50 4 214 - -
Seca8g01020 227 Gene3D - 1 214 IPR036457 -
Seca8g01020 227 SMART PP2C_4 2 205 IPR001932 -
Seca8g01020 227 SUPERFAMILY PP2C-like 22 208 IPR036457 -
Seca8g01020 227 ProSiteProfiles PPM-type phosphatase domain profile. 1 207 IPR001932 -
Seca8g01020 227 PANTHER PROTEIN PHOSPHATASE 19 207 IPR015655 GO:0004722|GO:0006470
Seca8g01020 227 Pfam Protein phosphatase 2C 18 166 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01020 Seca-Chr8 14266615 14267670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01020 1 213 PP2C-type Phosphatase Gene Family AT1G07430 62.712 3.97e-99 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01020 K14497 - gmx:100781388 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01020 8 14266615 14267670 Seca6g02246 6 83374078 83376065 ECH
Seca8g01020 8 14266615 14267670 Seca8g01020 8 14266615 14267670 ECH
Seca8g01020 8 14266615 14267670 Seca6g02246 6 83374078 83376065 PCT