Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01008 ATGAAGGCATTGATTCTGGTTGGGGGGTTTGGGACAAGGTTGAGGCCATTGACACTCAGTGTCCCTAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTGCATCAGATAGAGGCTCTTAAGGCTGCTGGAGTTACTGAAGTTGTACTAGCCATCAATTACCAACCAGAGCTACTGCAGGTTATGTTGAATTTCTTGAAGGATTTTGAAGCAAAGCTTGGCATCAAGATCACATGTTCTCAAGAAACTGAACCACTGGGAACTGCAGGCCCCCTGGCTCTTGCTAGGGATAAGCTGATAGACGACTCTGGAGAGCCATTTTTTGTTCTCAATAGTGATGTTATCAGTGAGTACCCACTTAAAGAAATGATTGAATTCCATAAAGCCAATGGAGGAGAGGCTTCCATAATGGTAACAAAGGTTGATGAGCCATCAAAATACGGTGTGGTAGTGATGGAGGAGACCACCGGGCAGGTTGAGAAATTTGTTGAAAAACCGAAGTTGTTTGTTGGTAACAAAATCAATGCTGGAATTTACCTGCTGAATCCCTCTGTTTTGGATCGAATTGAACTGAGGCCCACTTCTATCGAAAAAGAGGTGTTTCCAAAGATTGCTGCAGAGAAAAAGCTATTTGCAATGGTCCTGCCAGGATTCTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGCCTGAGGCTTTACCTGGACTCACTGAGGAAGAAGTCTTCTGCTAAGTTGGCCAGTGGCACTCACATTGTGGGGAATGTCATTGTGGATGAGACAGCAAAAATTGGCGAGGGATGTCTCATTGGACCTGATGTCGCTATTGGTCCTGGTTGCATTGTTGAGCCAGGTGTTAGGCTCTCCTGCTGCACAGTAATGCGAGGAGCCCGGATTAAGAAGCATGCTTGCATATCCAGCAGTATCATTGGGTGGCATTCCACTGTTGGGCAATGGGCTCGAGTGGAGAATATGACTATCCTGGGAGAAGATGTCCATGTATGTGATGAAATTTACAGCAATGGTGGTGTGGTTTTGCCCCACAAGGAGATCAAGTCAAATATTCTGAAGCCTGAAATAGTCATGTGA 1095 0.453 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAAGVTEVVLAINYQPELLQVMLNFLKDFEAKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKEMIEFHKANGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLFAMVLPGFWMDIGQPRDYISGLRLYLDSLRKKSSAKLASGTHIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVEPGVRLSCCTVMRGARIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSNILKPEIVM. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01008 364 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 363 - -
Seca8g01008 364 Gene3D Hexapeptide repeat proteins 237 361 - -
Seca8g01008 364 CDD M1P_guanylylT_B_like_N 1 237 IPR045233 GO:0004475|GO:0005525|GO:0009298
Seca8g01008 364 Pfam Nucleotidyl transferase 2 232 IPR005835 GO:0009058
Seca8g01008 364 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 236 IPR029044 -
Seca8g01008 364 Pfam Bacterial transferase hexapeptide (six repeats) 264 297 IPR001451 -
Seca8g01008 364 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 315 IPR029044 -
Seca8g01008 364 FunFam mannose-1-phosphate guanyltransferase beta 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01008 Seca-Chr8 14089816 14094372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01008 1 164 Eukaryotic Initiation Factors Gene Family AT2G34970 25.824 2.23e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01008 K00966 - gmx:100808375 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01008 8 14089816 14094372 Seca8g01008 8 14089816 14094372 ECH
Seca8g01008 8 14089816 14094372 Seca6g02233 6 83259770 83264579 PCT