Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01000 ATGAGCACACAAGGGCAAGGACAACAAGGGATTGAGGAGGCTGTGCTGGATGACATAATCCGGCGCCTCACTGAGGTCCGATTGGCCCGACCCGGAAAGCAGGTTCAGCTTTCTGAGGCTGAGATCAAGCAGCTCTGTGTCGCTTCTAGAGACATCTTCCTTCAACAACCCAATTTGCTTGAACTTGAAGCCCCCATCAAGATTTGTGGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTCTTTGAGTATGGAGGTTTGCCTCCTAGTGCTAATTATCTCTTTTTAGGGGACTATGTGGATCGTGGGAAGCAGAGCTTAGAAACCATATGTCTTTTGCTTGCTTATAAAATCAAATATCCAGAAAACTTTTTCCTTTTGAGGGGGAATCATGAGTGTGCTTCCATTAATAGGATATATGGATTTTATGATGAATGTAAGAGAAGGTTTAATGTGAGGCTTTGGAAAGCCTTTACAGACTGTTTTAACTGCCTTCCTGTGGCAGCCCTTATAGATGATAAAATATTGTGCATGCATGGTGGTCTTTCCCCTGAACTCACAAATTTGGATCAAATCAGGAATCTACCTCGTCCAACTGCTATTCCAGACACTGGTTTGCTTTGTGATTTGCTTTGGTCTGATCCTGGTAGAGATGTGAAAGGTTGGGGTATGAATGACAGAGGAGTCTCCTACACCTTTGGCCCTGATAAGGTGGCTGAATTTTTGACAAAGCATGACTTGGACCTTATTTGTCGTGCTCATCAGGTTGTAGAGGATGGGTATGAATTCTTTGCCGACAGGCAACTTGTTACGATATTTTCAGCTCCAAACTACTGTGGTGAATTTGACAATGCTGGTGCAATGATGAGTGTGGATGAAAACTTGATGTGCTCTTTCCAGATTCTTAAGCCTGCAGAGAAAAAAGCAAAGTTCCCGATGTCAAACAAGATGTGA 957 0.4347 MSTQGQGQQGIEEAVLDDIIRRLTEVRLARPGKQVQLSEAEIKQLCVASRDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPSANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTDCFNCLPVAALIDDKILCMHGGLSPELTNLDQIRNLPRPTAIPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPAEKKAKFPMSNKM. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01000 318 FunFam Serine/threonine-protein phosphatase 63 316 - -
Seca8g01000 318 Gene3D - 8 316 IPR029052 -
Seca8g01000 318 SMART pp2a_7 37 307 IPR006186 GO:0016787
Seca8g01000 318 Pfam Calcineurin-like phosphoesterase 65 257 IPR004843 GO:0016787
Seca8g01000 318 PRINTS Serine/threonine phosphatase family signature 65 92 IPR006186 GO:0016787
Seca8g01000 318 PRINTS Serine/threonine phosphatase family signature 190 217 IPR006186 GO:0016787
Seca8g01000 318 PRINTS Serine/threonine phosphatase family signature 247 267 IPR006186 GO:0016787
Seca8g01000 318 PRINTS Serine/threonine phosphatase family signature 127 151 IPR006186 GO:0016787
Seca8g01000 318 PRINTS Serine/threonine phosphatase family signature 94 121 IPR006186 GO:0016787
Seca8g01000 318 PRINTS Serine/threonine phosphatase family signature 269 285 IPR006186 GO:0016787
Seca8g01000 318 PRINTS Serine/threonine phosphatase family signature 161 187 IPR006186 GO:0016787
Seca8g01000 318 ProSitePatterns Serine/threonine specific protein phosphatases signature. 128 133 IPR006186 GO:0016787
Seca8g01000 318 CDD MPP_PP1_PPKL 15 305 - -
Seca8g01000 318 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 15 310 - -
Seca8g01000 318 Pfam Serine-threonine protein phosphatase N-terminal domain 16 63 IPR031675 -
Seca8g01000 318 SUPERFAMILY Metallo-dependent phosphatases 26 314 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01000 Seca-Chr8 14009005 14017038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01000 44 250 Calmodulin-binding Proteins AT5G63870 30.242 3.45e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01000 K06269 - gmx:100811593 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01000 8 14009005 14017038 Seca8g01000 8 14009005 14017038 ECH