Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00998 ATGGCTCCTTCTTCAGATATCAATCATCTTTCTCATCCATGTATATATGGGGATTTTAGTCACTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAAAGGAGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCTCCAGAGGAAAACATGGTTTGGCGCCGTCCATCCAGACCTTTGGATGATCGTGCTAGAGCTCAGAAGGAAAAAGAGGATCTGGGCCATGCAATGGCACTTTCTTCAGCTGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATGGTTGGGGGGCAGACCCTGATGAAGATTACACAAAGGGACTTCAGGATAACCTAAAGTCATCTGCACATCCTCCATATGCTCCTGCACCATTTTATCCCAATGAATATAGAAGAATATGTGGTGGATGCAACCAGGAGATAATCTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCATCCAGATTGCTTTCGCTGTCACTCTTGTGGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCATGTTTTAAAGAGTTGACCCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAGAGATTAGAGCCTCGGAATATAAAATACTATAGACTTGAAGATGGAAGGAGTTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGATTGTCAGCCTCTGTACCATTCCATCAGAGATTATTATGAAGGAATGCAAATGAGAATAGATCAACAAATTCCCATGCTTCTCGTTGAGAGAGAAGCACTTAATGAAGCTATTGTTGGAGAGAAGAATGGTTTCCATCACTTGCCAGAGACAAGGGGTTTATGCCTTTCAGAAGAGCAGACAGTCACTAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTAATAGGCATGAGAACTCAACCTCAAAAGCTGACTAGAAAATGTGAAGTTACAGCAATCCTTGTTCTATATGGTCTTCCGAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGGTTGGTTGCGCCTTAAAGGTATGCATTCACATTTCTTAGGTTACCGCAACCTTAATCCTGAAGTAGAGGAAGGCATCTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTAATGCCAAGTTATCATAGCATGCCATCAACATCCACAGCTTCTTCTTCCTCCTCCTCCTCCTCAAAGAAAGGTGCAAAGTCTCACGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTTTTAATGATTCTTCCCCAGCTTATGGTGGTGGCTTCAGAGCAGCTAATGAAGCTGTCAATAAATATGGTCTACGTTGTACCCTAGAGCATATTCGTTTAACTGGCTTTTTCCCAGTGTAA 1530 0.4196 MAPSSDINHLSHPCIYGDFSHSERKSGFMKWLSKLFKGGSNRGRGGRHLHEPPEENMVWRRPSRPLDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYGWGADPDEDYTKGLQDNLKSSAHPPYAPAPFYPNEYRRICGGCNQEIIYGNCLGCMDTYFHPDCFRCHSCGYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPRNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGMHSHFLGYRNLNPEVEEGICQVLSYMWLESEVMPSYHSMPSTSTASSSSSSSSKKGAKSHVENKLGEFFKNQIFNDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGFFPV. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00998 509 SMART lim_4 139 191 IPR001781 -
Seca8g00998 509 ProSitePatterns LIM zinc-binding domain signature. 140 174 IPR001781 -
Seca8g00998 509 CDD LIM_DA1 140 192 - -
Seca8g00998 509 ProSiteProfiles LIM domain profile. 138 198 IPR001781 -
Seca8g00998 509 Pfam Protein DA1 289 504 IPR022087 -
Seca8g00998 509 Gene3D Cysteine Rich Protein 127 197 - -
Seca8g00998 509 MobiDBLite consensus disorder prediction 435 454 - -
Seca8g00998 509 PANTHER PROTEIN DA1-RELATED 2 31 508 IPR045218 -
Seca8g00998 509 MobiDBLite consensus disorder prediction 435 453 - -
Seca8g00998 509 FunFam Protein DA1-related 2 129 193 - -
Seca8g00998 509 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 165 - -
Seca8g00998 509 Pfam LIM domain 140 193 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00998 Seca-Chr8 13860534 13865389 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g00998 DA1-like 1.2e-95 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00998 - - gmx:100784976 940.258