Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00995 ATGGGGGAAAATTTGGAGTCTTGTCATGTCCCACAACAGAGCAGAAGAAACAAGCTCCGAGTATTAATGGTCCAAACCCATCATCCACAACCATTCTCAGCTCCACCCTTTCAACCAAATCCAGCTTCCTCACCATTTAACCCCAACACCCTCACAATTCCCCTATTCTCACACTCACTACCACCAAAAACTCCATGTTCTGCTTCACATCTCGAACAAACTATAACTTTTCACAGTTTTCAACCCCATGTGGTTGTTCATGAGTCCCAAGCACCATGTAATGACTTGAGAAAATGGGTTCCAATGGGTCCCTTTACTGGCTACGCTTCTATCTTAAAGCGGTCAAGATTTTTGAAGCCAGCTCAGCAACTTCTTGAAGACTTTTGCGGTAGTGTTTTGGATCCTCCATCATTAGATAGCCTAAGCGAGCAAAATGATACTCATGAGGATCCTATCACTGGCGGGGATACAACAATCCAGTATCAGTGGAGGAATTCAAGACTCGCCTGCATGCTAGAGGAGGTATACACCAAGTATATCCTATACTGCCAGCAGATGCAATCAGTGGTGGCATCATTTCAAAAAGTTGCTGGGCTTGGAAACGCCACACCTTATATATCATTTGGTATCAAAACCATTTCTAAGCATTTTGGATGTTTGAAACATGCTATATATGTTCAACTTCAGTTTACAAGCAAGAGTACCCCTGCACCTAACAGTTTTGGTGAAAAGGAACTCTTAAAGTATTCAATATTTGAGAAAGGTATTGGTATGCCAGGATCAGTGCAGAATAAACACTCTGTCCAACCTATTTTGAGATCCCAAAGAGGGCTTCCAGATCATGCTGTAGCTTTGCTAAGGAGATGGCTCTTTGAACACTTCTTACACCCTTATCCTACGGATTGTGAAAAGGATACATTGGCTCAACAAACTGGTTTTCCAAGATGTCAGGTTTCTAATTGGTTCATCAATGCAAGAGTGAGAATCTGGAAGCCCATGGTGGAAGAGATGCACATGCTTGGGGAACAGCAGGCCCAAACAATAGAAGTGAATCAAAAGTTCAGCATGCCTAACATTGGCCCATTTGTTTGA 1092 0.4267 MGENLESCHVPQQSRRNKLRVLMVQTHHPQPFSAPPFQPNPASSPFNPNTLTIPLFSHSLPPKTPCSASHLEQTITFHSFQPHVVVHESQAPCNDLRKWVPMGPFTGYASILKRSRFLKPAQQLLEDFCGSVLDPPSLDSLSEQNDTHEDPITGGDTTIQYQWRNSRLACMLEEVYTKYILYCQQMQSVVASFQKVAGLGNATPYISFGIKTISKHFGCLKHAIYVQLQFTSKSTPAPNSFGEKELLKYSIFEKGIGMPGSVQNKHSVQPILRSQRGLPDHAVALLRRWLFEHFLHPYPTDCEKDTLAQQTGFPRCQVSNWFINARVRIWKPMVEEMHMLGEQQAQTIEVNQKFSMPNIGPFV. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00995 363 ProSiteProfiles 'Homeobox' domain profile. 269 332 IPR001356 GO:0003677
Seca8g00995 363 SMART prehox3 106 226 IPR006563 -
Seca8g00995 363 Gene3D - 272 344 - -
Seca8g00995 363 Pfam Associated with HOX 111 224 IPR006563 -
Seca8g00995 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 341 - -
Seca8g00995 363 Pfam Homeobox KN domain 289 328 IPR008422 GO:0003677|GO:0006355
Seca8g00995 363 SMART HOX_1 272 336 IPR001356 GO:0003677
Seca8g00995 363 CDD homeodomain 273 333 IPR001356 GO:0003677
Seca8g00995 363 SUPERFAMILY Homeodomain-like 276 340 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00995 Seca-Chr8 13848897 13853045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00995 97 340 Homeobox Transcription Factor Family AT5G02030 45.221 1.05e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca8g00995 POX 4.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00995 - - adu:107457744 405.216