LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g00992	ATGGACTATGGAAAAGATGACATCATATCTCCTAGGGATTCGGAAGGGCATGGGACTCATTGTGCCTCTATTGTTGCTGGAAACTCTATTAAATCTGCAAGTCTATATGGGCTTGCCTCAGGGATAGCAAGAGGAGGAGTTCCATCTGCACGTATTGCTGTATACAAACCATGTTGGTCATTGGGTTGTGAAGAAGCTGACATCCTTGCAGCATTTGATGAAGCCATTGCAGATGCAGCTAGCACTATAGACATGAAGTTTTTCACCAAGGTTCGGTTGGGTGATGGAACCATCTATCAGGGAGTTTCAGTAAATACATTTGATCTTAAAAATGTAAGCTATCCTTTAATTTATGCTGGAGTTGCACCCAATATCACTGGTGGATATAATAGTTCCATATCCAGGTTTTGCATTGAAGGTTCTTTAGACCAAGATTTGGTAAAGGGAAAGATTGTTTTATGTGATGGTTTTCGTGGTTCTACATCAGTGGGACTCGTTTCTGGGGCAGCTAGTATTTTATTTCATAGTTCCTCTCCAAAAGATGTGGCATTTACATTTTCACTGCCAGCGATTCACCTTAGTGAAAATGATGGGGAACTCATACACTCCTACATAAATTCAACGAGAAATCCAACAGCCATAATATTTAAAAGTAATGGAGATAAAGATTCGTTAGCCCCTTACATAGCTTCATTCTCATCTAGGGGTCCAAATGCAGTAACTCCAGACATTCTCAAGCCTGATCTAGCCGCTCCTGGAGTTGACATTCTAGCTGCATGGTCTCCAATTGCTCCTGTTTCCAGGGTTAAAGGTGATACTAGAGTATCAAACTACAACATATTGTCTGGAACTTCTATGGCATGCCCTCATGCTACTGCAGCGGCTGCCTACGTCAAATCATTTCATCCCAATTGGTCACCTGCAGCAATCAAATCTGCACTAATGACCACTGCCACTCGTATGAGTGCCACACTTAATCCTGAAGCTGAATTTGCTTATGGTGCTGGGCAAATTGATCCCATCAAGGCAGTGAATCCTGGATTAGTATATGATGTTGGTGAAATTGATTATGTTAAGTTTCTATGTGGACAAGGTTATGATACCAAAAAGTTGCGAACCATCACTGATGATGATAGCAGTTGTACACCATCCAACAATGGAACTGCTTGGGACTTGAATCTCCCATCTTTTACTCTTTCCACAAATGGCTCAAGATCTTTTAGTCGCATTTTCCATAGAACTGTTACACATGTTGGATCTACTACATCAAGGTATAAGGCTAAAATAACTGTACCTTTATCTTCAATAAGCATCAAAGTGGAGCCAGATGTTTTGTCCTTCTCATCGATGGGTGAGAAGAAGTCATTTACTATTAGGATTAACGGGACCATTAATGTGGGAATGGTTTCTTCTTCTTTGGTTTGGGATGATGACATTTTTCAAGTAAGAAGCCCCATTGTTGTTTACATTGGATAA	1476	0.4065	MDYGKDDIISPRDSEGHGTHCASIVAGNSIKSASLYGLASGIARGGVPSARIAVYKPCWSLGCEEADILAAFDEAIADAASTIDMKFFTKVRLGDGTIYQGVSVNTFDLKNVSYPLIYAGVAPNITGGYNSSISRFCIEGSLDQDLVKGKIVLCDGFRGSTSVGLVSGAASILFHSSSPKDVAFTFSLPAIHLSENDGELIHSYINSTRNPTAIIFKSNGDKDSLAPYIASFSSRGPNAVTPDILKPDLAAPGVDILAAWSPIAPVSRVKGDTRVSNYNILSGTSMACPHATAAAAYVKSFHPNWSPAAIKSALMTTATRMSATLNPEAEFAYGAGQIDPIKAVNPGLVYDVGEIDYVKFLCGQGYDTKKLRTITDDDSSCTPSNNGTAWDLNLPSFTLSTNGSRSFSRIFHRTVTHVGSTTSRYKAKITVPLSSISIKVEPDVLSFSSMGEKKSFTIRINGTINVGMVSSSLVWDDDIFQVRSPIVVYIG.	492

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g00992	491	Gene3D	-	361	490	-	-
	Seca8g00992	491	PRINTS	Subtilisin serine protease family (S8) signature	13	26	IPR015500	-
	Seca8g00992	491	PRINTS	Subtilisin serine protease family (S8) signature	282	298	IPR015500	-
	Seca8g00992	491	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	344	-	-
	Seca8g00992	491	ProSitePatterns	Serine proteases, subtilase family, serine active site.	283	293	IPR023828	-
	Seca8g00992	491	Pfam	Fibronectin type-III domain	391	488	IPR041469	-
	Seca8g00992	491	Gene3D	Peptidase S8/S53 domain	79	357	IPR036852	GO:0004252\|GO:0006508
	Seca8g00992	491	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	79	488	IPR045051	-
	Seca8g00992	491	ProSitePatterns	Serine proteases, subtilase family, histidine active site.	17	27	IPR022398	-
	Seca8g00992	491	Pfam	Subtilase family	10	80	IPR000209	GO:0006508\|GO:0008236
	Seca8g00992	491	Gene3D	Peptidase S8/S53 domain	5	78	IPR036852	GO:0004252\|GO:0006508
	Seca8g00992	491	SUPERFAMILY	Subtilisin-like	7	345	IPR036852	GO:0004252\|GO:0006508
	Seca8g00992	491	Gene3D	-	84	222	-	-
	Seca8g00992	491	Pfam	Subtilase family	225	336	IPR000209	GO:0006508\|GO:0008236

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g00992	Seca-Chr8	13777752	13781407	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g00992	10	489	Subtilisin-like Serine Gene Family	AT3G46850	41.026	1.43e-117	360

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g00992	-		-	gmx:100800042	692.575