LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g00989	ATGGACAATGTTGTCTCTGTTTTCCCAAACACAAAGCATCATCTTCACACAACAAGATCCTGGGACTTCGTAGGATTTCCCCAGCAAGTCAAAAGAGCAAGTTTGGAGAGTGACATAATTGTTGGAGTAGTAGACACAGGAATTTGGCCAGAGTCTAAGAGCTTCAGTGATGAAGGATTCGGTCCTCCACCAAGCAAATGGAAGGGATCCTGCCATAACTTCACTTGCAACAACAAGATAATTGGCGCAAGATTCTTTAACATTGAAGGATCCTATACTAAAGATGACATCAAATCTCCAAAAGATACAAATGGCCATGGATCACACTGTGCATCCACAATTGTTGGAAACGTGGTGAACTCTGTAAGTGTACTAGGCTATGCCTCAGGGACAGCTCGTGGAGGAGTTCCATCAGCCCGAATTGCAGTCTACAAAGTTTGTTGGACAGATAATTGTGCTGAGGCTGATGTTCTTGCAGCATTTGATGCAGCAATTGCTGATGGAGTTGACGTGATTTCTGCTTCATTTGGACCAACTGACAAAATTCACCCTGCCTATTTTCAAAATTCAGTTAATATAGGAAGTTTTCATGCAATGAAAAGAGGAGTATTTATGTCAAATTCTGCCAATAATTTGGGCCCTGATTTTTACTCCATGACAAATTATCCACCATGGTTACTCTCTGTAGCTGCTAGCACTTTTGGCAGAGAGTTCATTACCAAAGTGCAGTTGGGCAATGGCGCCGTTTATGAGGGGTCTTCAATTAACACATTTGATCTCAAAAACAAAATGTTTCCACTGATTTTCGCTGGAGATGTACCAAACACTGCTGGTGGATTTAACAGTTCCTTATCCCGGTTTTGCGTTGAGAATTCTGTGGATAAACATTCGGTGAAGGGAAAGATCGTTATATGTGAGGGCATTCAGAATCCTTCAGACATAGGGTTTTTTTCTGGGGCAGCTGGTATTATATTTGGATATGTTTACCCAAAAGATTTACCATCAGCATTTGCCCTGCCTACGACATTCCTTAGTGGAGGGAACCTTAGAGAAATAAAATCTTACACCAAATCAACAAGAAATCCAACGGCCACAATATTTAAGAGTGACGAAGTGAAGGATTCATTATCCCCTTACATAGCATCATTCTCATCAAGAGGTCCAAACCCAATTACGCCAAACATTCTCAAGCCTGATATTGCTGCCCCAGGAGTTAATGTTCTAGCTGCATGGACTCCACTTGACCCAATTTCAGAAGTTAAAGGTGACAAAAGAGTATCACAATATAATGTGATTTCTGGCACTTCAATGGCTTGCCCTCATGCCGCCGCAACAGCTGCATACGTTAAATCATTTCACCCTAATTGGTCACCTGCTATGATAAAGTCTGCATTGATGACAACAGCTACTCCAATGAGTGCTGCTCTTAATCCTGAAGCTGAATTTGCATATGGTGCGGGGCTAATTAATCCTCTCAAGGCAACGAATCCTGGTTTAGTATATGATATTAGCGAAGCAGATTACGTTCAGTTCTTATGTGGAGAGGGCTATACAAAGAAAAAGATCCAAATTCTTACCAAAGATAAGAGTAGTTGCAAAGGAAAAGCAAACAAGAGAGCTGTGTACAACTTGAACCTTCCATCGTTTGCTCTTTATGAAAATGCCTCATCTTTTAATCATGTTTTTCATAGAACAGTTACAAATGTGGGATTTGCAACATCTACTTTTAAAGCCACAATAATATCTCCAACTTTGTTACAAATTCAGGTGAAACCAAATGTTCTTTCCTTTACATCTATAGGCCAGAAAAAATCATTTTCAGTTATAATTGAAGGGAGATCATTTAGTGTGGATGTAATATCTGCTTCATTGATTTGGGATGATGGTCATTTTCAAGTTAGAAGCCCAATTGTAGTGTATGGGTAG	1926	0.4013	MDNVVSVFPNTKHHLHTTRSWDFVGFPQQVKRASLESDIIVGVVDTGIWPESKSFSDEGFGPPPSKWKGSCHNFTCNNKIIGARFFNIEGSYTKDDIKSPKDTNGHGSHCASTIVGNVVNSVSVLGYASGTARGGVPSARIAVYKVCWTDNCAEADVLAAFDAAIADGVDVISASFGPTDKIHPAYFQNSVNIGSFHAMKRGVFMSNSANNLGPDFYSMTNYPPWLLSVAASTFGREFITKVQLGNGAVYEGSSINTFDLKNKMFPLIFAGDVPNTAGGFNSSLSRFCVENSVDKHSVKGKIVICEGIQNPSDIGFFSGAAGIIFGYVYPKDLPSAFALPTTFLSGGNLREIKSYTKSTRNPTATIFKSDEVKDSLSPYIASFSSRGPNPITPNILKPDIAAPGVNVLAAWTPLDPISEVKGDKRVSQYNVISGTSMACPHAAATAAYVKSFHPNWSPAMIKSALMTTATPMSAALNPEAEFAYGAGLINPLKATNPGLVYDISEADYVQFLCGEGYTKKKIQILTKDKSSCKGKANKRAVYNLNLPSFALYENASSFNHVFHRTVTNVGFATSTFKATIISPTLLQIQVKPNVLSFTSIGQKKSFSVIIEGRSFSVDVISASLIWDDGHFQVRSPIVVYG.	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g00989	641	CDD	Peptidases_S8_3	13	470	IPR034197	-
	Seca8g00989	641	ProSitePatterns	Serine proteases, subtilase family, histidine active site.	106	116	IPR022398	-
	Seca8g00989	641	ProSitePatterns	Serine proteases, subtilase family, serine active site.	434	444	IPR023828	-
	Seca8g00989	641	Gene3D	Peptidase S8/S53 domain	38	508	IPR036852	GO:0004252\|GO:0006508
	Seca8g00989	641	FunFam	Subtilisin-like protease SBT1.5	38	247	-	-
	Seca8g00989	641	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	2	639	IPR045051	-
	Seca8g00989	641	CDD	PA_subtilisin_like	242	366	-	-
	Seca8g00989	641	Gene3D	-	512	640	-	-
	Seca8g00989	641	Pfam	Subtilase family	37	487	IPR000209	GO:0006508\|GO:0008236
	Seca8g00989	641	ProSiteProfiles	Serine proteases, subtilase domain profile.	20	495	-	-
	Seca8g00989	641	Gene3D	-	235	373	-	-
	Seca8g00989	641	SUPERFAMILY	Subtilisin-like	15	499	IPR036852	GO:0004252\|GO:0006508
	Seca8g00989	641	PRINTS	Subtilisin serine protease family (S8) signature	36	55	IPR015500	-
	Seca8g00989	641	PRINTS	Subtilisin serine protease family (S8) signature	102	115	IPR015500	-
	Seca8g00989	641	PRINTS	Subtilisin serine protease family (S8) signature	433	449	IPR015500	-
	Seca8g00989	641	Pfam	Fibronectin type-III domain	543	639	IPR041469	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g00989	Seca-Chr8	13735869	13743909	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g00989	1	640	Subtilisin-like Serine Gene Family	AT5G59190	47.554	0.0	574

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g00989	-		-	gmx:100815516	922.924