Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00976 ATGGTGGTTACTGAGGATAAGTTTCATGTTGTTGTTGACATAATAGACAATAATGGCTGTCACCGGAGCTCCTCCGCCGGCGGCGGAGACGGCACTGAAGGGTGTTCTGACGCCGGCGACCGGTCAGATGAGGAGCAAAGGTCCTCCTCCCAGGATTCTTGTACCGAGATTGTGGGAGAGTGTGAGAAAGAGAGAAGATCCTCTGCATCAGAGTGTTCTGTTGAGGTGGATCTGGATGGTGCAGTCCCTGATGTTAAGGTGCATTTGGCTAAGGTGGAAAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGGACCCCCATTGAGCTGGGATGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAACAATGTGCTGAGGCTTGGTTTAAGATCAAGGGCAACAAGAACTTGTGA 435 0.5011 MVVTEDKFHVVVDIIDNNGCHRSSSAGGGDGTEGCSDAGDRSDEEQRSSSQDSCTEIVGECEKERRSSASECSVEVDLDGAVPDVKVHLAKVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKNL. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00976 144 SUPERFAMILY RING/U-box 93 141 - -
Seca8g00976 144 MobiDBLite consensus disorder prediction 22 56 - -
Seca8g00976 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 143 IPR013083 -
Seca8g00976 144 PANTHER ZINC FINGER, RING-CH-TYPE 19 142 - -
Seca8g00976 144 Pfam RING-variant domain 96 141 IPR011016 GO:0008270
Seca8g00976 144 SMART ringv_2 95 143 IPR011016 GO:0008270
Seca8g00976 144 ProSiteProfiles Zinc finger RING-CH-type profile. 88 144 IPR011016 GO:0008270
Seca8g00976 144 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00976 Seca-Chr8 13400633 13405634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00976 62 142 C3H Transcription Factor Family AT5G05830 70.370 3.07e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00976 - - gmx:100818979 198.749