Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00975 ATGACCGAAGTGGACCGCTCCGCCGAACCAACCGCTCACAATGGCGTCAACGAAACGGAGATTGTCTCAGGCATCGGCGGCGTCGAGGAGCCGGAACTCGCAGGCGGTGACGGTTCCGTCGCCGGAAGAGTAAAGGGACCTTGGTCGCCGGAGGAGGACGCAGTGCTGAGCCGATTAGTGGCACAGTTCGGGGCGAGGAATTGGAGCATGATCGCACGCGGAGTGCCAGGGCGGTCAGGCAAGTCGTGCCGTCTCCGATGGTGTAATCAACTAGACCCTTGCGTCAAACGAAAGCCCTTCACTGAGGAAGAGGATAGTATCATAGTTTCTGCCCATGCAGTCCATGGGAACAAATGGGCAGCAATTGCTAGGCTTCTTCCTGGTAGAACAGATAATGCTATCAAGAATCACTGGAATTCTACACTGAAGCGCAGGTGTATGGAACTGGGAAGATATGTCCCAGTAAATGCTGATGTGATGGAAGATGGTAGCTTTGAGAAAACAAAGGCTTCCTCTGAAGAAACCATGTCAGTTGGAGATATCAATTCATTGAATCCTACAGAAGTCAGAAATGTCGTGATGCATAATGAAGTTAAACAGTATGAAAATAAACCTCCAAATAAAGATGGTGCTGAAGTGGAGGGACATCCTACCCTTTGTCGACCAATAGCACGTGTAAGTGCATTTAGTGTTTATAATCCTCTGGGCAAGCCAACAACTGGATATTGTTCAAAGCTTTTCTCGAGGCAGACCCCTTTGATGCAAACCCCCAAACCACACGTAGGAGCCTGCAAGTTATTGGATGATATTGGATGTGAGCCCATGGTTCCATTGCACTGTGGTCATGGCTGCTGTGCGGCAGAATTGAGGGAAAGCCATTCTCATGCTTCAATATTAGGTCCTGAGTTTGTTGACTATTTGGAGCCTCCCTCTTTCTCAAGTCATGAATTGATTTCTATAGCTACAGACTTGAACAATATGGCTTGGATCAAGAGTGGCCTTGAGAATTATGGTGCCGGAGTAACTGAGAATACTGCAAACTTGACAGCATCCCAAGGGGCTGCAACTGCCTCATAA 1077 0.4856 MTEVDRSAEPTAHNGVNETEIVSGIGGVEEPELAGGDGSVAGRVKGPWSPEEDAVLSRLVAQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDSIIVSAHAVHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMELGRYVPVNADVMEDGSFEKTKASSEETMSVGDINSLNPTEVRNVVMHNEVKQYENKPPNKDGAEVEGHPTLCRPIARVSAFSVYNPLGKPTTGYCSKLFSRQTPLMQTPKPHVGACKLLDDIGCEPMVPLHCGHGCCAAELRESHSHASILGPEFVDYLEPPSFSSHELISIATDLNNMAWIKSGLENYGAGVTENTANLTASQGAATAS. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00975 358 CDD SANT 47 89 IPR001005 -
Seca8g00975 358 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
Seca8g00975 358 Pfam Myb-like DNA-binding domain 45 91 IPR001005 -
Seca8g00975 358 Pfam Myb-like DNA-binding domain 97 141 IPR001005 -
Seca8g00975 358 FunFam Transcription factor MYB44 99 145 - -
Seca8g00975 358 Gene3D - 99 145 - -
Seca8g00975 358 ProSiteProfiles Myb-like domain profile. 45 91 IPR001005 -
Seca8g00975 358 CDD SANT 99 142 IPR001005 -
Seca8g00975 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 91 IPR017930 -
Seca8g00975 358 PANTHER MYB PROTEIN-RELATED 45 195 - -
Seca8g00975 358 Gene3D - 44 96 - -
Seca8g00975 358 MobiDBLite consensus disorder prediction 1 43 - -
Seca8g00975 358 SUPERFAMILY Homeodomain-like 42 138 IPR009057 -
Seca8g00975 358 FunFam MYB transcription factor 45 96 - -
Seca8g00975 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 146 IPR017930 -
Seca8g00975 358 SMART sant 44 93 IPR001005 -
Seca8g00975 358 SMART sant 96 144 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00975 Seca-Chr8 13393246 13397733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00975 8 336 MYB Transcription Factor Family AT3G55730 48.870 2.60e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g00975 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00975 K09422 - gmx:100781228 559.681