Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00968 ATGGGATACGACTTCGAAATTCAATACAAGTCGGGCCTAGAAAATAAGGCAACAGATGCATTATCACACATAATGGACTATGGTGCAATTTCAATGGTCACCAATGCTGATTTGGTGGAAATATCAGAGGAGGTTATGGCTGATAAGCAACTTCGGGTGATTATGCAGGAACTTGTGAGGGATCCAAAGTCCCATCCTCATTATTCAGTTTCTAAAGGAGAGTATTCTGGTGTCACCCGGACCTACAAACGCTTGGCTATGGCTTTTCATTGGAATGGAATGAAACAAGATGTGGAAAAGTTTGTGGCTGCTTGTCAGGTGTGTCAACAGAGTAAGGTTCAGGACCTTAAACATGCATGCCTATTACAGCCACTTCCCATTCCAAATCATGTGTGGGAAGGCATTTCTATGGACTTTATCAGTGGGCTGCCCAAGGCAAAGAATGCATACACTATCATGGTGATTGTGGATAGGTTGATCTCGGATAGGGACCGCTTGTTCCTAAGTACATTTTGGCAAGAGCTCTTCCGATTATCGGGCACTTCACTCAAATTTAGTTCCGCCTACCACCCTCAAACTGATGGCCAAATGGAGGTGACCAATCACACCATTGGGGCGTATTTGAGATGCTTTGTTTCTTATCACCCATGTCAATGGGTGAAATGGTTACCATGGGGAGAATTCTGGTTTAATTCCTCTTTCAATGTCACTATAAACATGAGTCCATTTAAGGCTCTGTATGGCCGAGATCCTCCTATGATTATCCCATACCCAAGAGACAGCACTATCATAGCTGAACTTGACCAAGAGCTGATGCTTCGTGATAGTATCCTGGCTGAGTTGAAGCAAAACCTGCTCAAGGCACAAGGGAGAATGAAAGAACAAGCTGATAAGGGTAGGCGTGAGGTGGAATTTCTGGTAAGAGACATGGTGTACTTGAAAGCTCAACCTTATAAATTACGGTCATTAACTACACGCATTAATGAAAAACTCAGTCCCAGGTTTTATGGGCCATTCAAGGTCTTGGACAGAATTGGGGAAGTGGCGTACATATTACAACTTCCAGACAGCTCACGATTACACTCTGTGTTCCATGTTTCACAGTTAAAGAAGGCTTTACCCTCTTGCCACCTGAGTCAAGAACTGCCCAAGTTCCTCTCAAATGAGTTTGAATTGATGGTAGAGCAGCAAGTGTTGGCCACAAGGAAATTGTTGAGTGGAAAGTGGCAAGTGCTGATAAAATGGACTGACTTACCCACAGAAGACAGTTCCTGGGAAGATTATGAGGTGATTCAAGCTGTTTTTCCCCGATTCCACCTTGAGGACAAGGTGTCGCTCATTGGGGAGGGTATTGATGGGGCTCAACAGCAGAGGCCTTTGAAATATTCCTACCGCAGGAGGGGCAAAAAGATCTCTAAAGAACTTCATCGAAGCTTGGAATCCGGTGCCTGTACAATTCAAAAATTGCAGCTTCCGCCGAGCGTAGAAGAAGGAGAACGAGAACGAGAACGAGAACGAAGCAGTTCGTGCATCGTCAACCATATCAAAATGGTTAAAGGACGCCAAGGAGAGCGCGTTAGGCTTTACGTTAGAGGTTCAATTCTTGGATACAAGAGATCCAAGTCAAATCAATACCCAAACACCTCTCTTATCCAGATTGAGGGAGTAAACTCCAAGGAAGAGGTCTCATGGTACAGTGGGAAGCGTATGGCATACATTTACAAAGCCAAGGTAAAGCAGAATGGAACTCATTATCGCTGCATTTGGGGTAAGGTTATCAGGCCTCATGGTAACAGTGGTATAGTCCGTGCTAAGTTCAAGTCGAATCTGCCACCAAAATCAATGGGAGCAAGAGTTAGAGTCTTTATGTATCCAAGCAACATATGA 1887 0.443 MGYDFEIQYKSGLENKATDALSHIMDYGAISMVTNADLVEISEEVMADKQLRVIMQELVRDPKSHPHYSVSKGEYSGVTRTYKRLAMAFHWNGMKQDVEKFVAACQVCQQSKVQDLKHACLLQPLPIPNHVWEGISMDFISGLPKAKNAYTIMVIVDRLISDRDRLFLSTFWQELFRLSGTSLKFSSAYHPQTDGQMEVTNHTIGAYLRCFVSYHPCQWVKWLPWGEFWFNSSFNVTINMSPFKALYGRDPPMIIPYPRDSTIIAELDQELMLRDSILAELKQNLLKAQGRMKEQADKGRREVEFLVRDMVYLKAQPYKLRSLTTRINEKLSPRFYGPFKVLDRIGEVAYILQLPDSSRLHSVFHVSQLKKALPSCHLSQELPKFLSNEFELMVEQQVLATRKLLSGKWQVLIKWTDLPTEDSSWEDYEVIQAVFPRFHLEDKVSLIGEGIDGAQQQRPLKYSYRRRGKKISKELHRSLESGACTIQKLQLPPSVEEGERERERERSSSCIVNHIKMVKGRQGERVRLYVRGSILGYKRSKSNQYPNTSLIQIEGVNSKEEVSWYSGKRMAYIYKAKVKQNGTHYRCIWGKVIRPHGNSGIVRAKFKSNLPPKSMGARVRVFMYPSNI. 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00968 628 Coils Coil 278 298 - -
Seca8g00968 628 ProSiteProfiles Integrase catalytic domain profile. 159 250 IPR001584 GO:0015074
Seca8g00968 628 PANTHER 60S RIBOSOMAL PROTEIN L35A 518 628 IPR001780 GO:0003735|GO:0005840|GO:0006412
Seca8g00968 628 ProSitePatterns Ribosomal protein L35Ae signature. 590 611 IPR018266 GO:0003735|GO:0005840|GO:0006412
Seca8g00968 628 Gene3D - 31 112 - -
Seca8g00968 628 FunFam 60S ribosomal protein L35a 523 628 - -
Seca8g00968 628 SUPERFAMILY Translation proteins 528 622 IPR009000 -
Seca8g00968 628 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 530 622 IPR001780 GO:0003735|GO:0005840|GO:0006412
Seca8g00968 628 SUPERFAMILY Chromo domain-like 359 434 IPR016197 -
Seca8g00968 628 Gene3D - 122 289 IPR036397 GO:0003676
Seca8g00968 628 Pfam Integrase zinc binding domain 73 113 IPR041588 -
Seca8g00968 628 Pfam Ribosomal protein L35Ae 528 622 IPR001780 GO:0003735|GO:0005840|GO:0006412
Seca8g00968 628 SUPERFAMILY Ribonuclease H-like 124 244 IPR012337 -
Seca8g00968 628 Gene3D translation elongation factor selb, chain A, domain 4 522 628 IPR038661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00968 Seca-Chr8 13241475 13249761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00968 517 628 Cytoplasmic Ribosomal Protein Gene Family AT1G07070 88.393 8.40e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00968 - K02209 sot:102595311 489.96