Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca8g00964 | ATGTCTTTTATTGGCACCCAACAAAAGTGCAAGGCTTGTGACAAAACGGTCTATCCAGTTGATCAGCTATCTGCTGATGGTGTTGCTTACCATAAAGCTTGTTTCAAGTGCTCTCACTGCAAAGGAACGTTAAAGTTGAGCAACTATTCCTCGATGGAAGGTGTTCTTTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAAACAGGCACTTTTAAGAAGAATTTCCAGTCACGTATGCCTTATTCTGTTTTCTTTTTCTTGAGCTCTGTTTGTACAAGGTCCCCTAGTAAAGCTGCTAGTATGTTTTCCGGGACACAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAAGGTCAGGCATATCATAAATCATGTTTCAAATGTTCACATGGTGGCTGTCCCATAACGCCATCGAATTATGCAGCCCTTGAGGGCGTTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGCAGCTATAATCATCTCATTAAGTCTGCATCAATGAAAAGAGCAGCAACCTCTGTTCAACAAACTTGA | 576 | 0.4167 | MSFIGTQQKCKACDKTVYPVDQLSADGVAYHKACFKCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFKKNFQSRMPYSVFFFLSSVCTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKSASMKRAATSVQQT. | 192 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca8g00964 | 191 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Seca8g00964 | 191 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
| Seca8g00964 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Seca8g00964 | 191 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Seca8g00964 | 191 | SMART | lim_4 | 109 | 161 | IPR001781 | - | |
| Seca8g00964 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Seca8g00964 | 191 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Seca8g00964 | 191 | Gene3D | Cysteine Rich Protein | 104 | 174 | - | - | |
| Seca8g00964 | 191 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Seca8g00964 | 191 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Seca8g00964 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 175 | - | - | |
| Seca8g00964 | 191 | PANTHER | OS06G0237300 PROTEIN | 5 | 79 | - | - | |
| Seca8g00964 | 191 | CDD | LIM2_SF3 | 110 | 170 | - | - | |
| Seca8g00964 | 191 | FunFam | LIM domain and actin-binding 1 | 104 | 174 | - | - | |
| Seca8g00964 | 191 | Pfam | LIM domain | 110 | 165 | IPR001781 | - | |
| Seca8g00964 | 191 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Seca8g00964 | 191 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Seca8g00964 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca8g00964 | Seca-Chr8 | 13187298 | 13188994 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Seca8g00964 | LIM | 2.3e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca8g00964 | K09377 | - | gmx:100807765 | 351.288 |