Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00953 ATGGATTTAGAAACCCTCTATGCCCCTTGTTTTATGTCAAATTCAAATTGGTTTGTCCAAGAGAGTCATAGCAGTGAATGGACTAGAGAAGATAATAAGAAGTTTGAAAGTGCCCTTGCCATATATGATAAGGACACCCCAGACAGATGGCTGAGAGTGGCAGCTATGATCCCTGGGAAGACTGTGTTTGATGTGATCAAGCAGTACAGGGAATTAGAAGAAGATGTAAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGGTATCTTGCCTCTTCTTTCACCTTTGAGCTGGTGAACAACCACAACTATGATGGATGTAGAAGGAGGACTGTAACTGTCAGGGGTTCTGATCAGGAGAGGAAGAAAGGTGTCCCTTGGACAGAAGAAGAACACAGACGTTTTCTGATGGGACTTCTAAAGTATGGTAAAGGGGATTGGAGAAACATTGCTCGCAATTTTGTTGTCACAAAGACTCCCACTCAAGTAGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGGAAAGATAAAAGAAGACCTAGCATCCATGATATAACCACTGTTAATCTTACAGAAACTGCTGCACCAGATAAGAACAAACCCCCACCATTCAATGTGTCTTCCATGCTTGCACCACAGCAAAAGCTGACTAGCATGTCAAAAGTACAACTTGGCTGGACTAGTCACTACAATGATGATGGATCACTCATGGTTTTCAACCCAAATTGTGATGACTTATTAATGTCATCTTCATCTGATCATATCACTTCCAAGACCCTTAAACTACAAGGGCAGGATCTCTATGACTGTGCTTTGCATGAGGCTTATGCCAAGCTAAAATCCCCTGGTTTCAGGATGGCTTCTAGAAACTTCAATAATGAAGCTGTTTATGGTATTCATGCACTGTAA 924 0.421 MDLETLYAPCFMSNSNWFVQESHSSEWTREDNKKFESALAIYDKDTPDRWLRVAAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVNNHNYDGCRRRTVTVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNIARNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAAPDKNKPPPFNVSSMLAPQQKLTSMSKVQLGWTSHYNDDGSLMVFNPNCDDLLMSSSSDHITSKTLKLQGQDLYDCALHEAYAKLKSPGFRMASRNFNNEAVYGIHAL. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00953 307 SMART sant 23 75 IPR001005 -
Seca8g00953 307 SMART sant 123 173 IPR001005 -
Seca8g00953 307 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Seca8g00953 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 236 IPR043363 -
Seca8g00953 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Seca8g00953 307 CDD SANT 26 72 IPR001005 -
Seca8g00953 307 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Seca8g00953 307 FunFam Transcription factor SRM1 19 86 - -
Seca8g00953 307 Gene3D - 19 86 - -
Seca8g00953 307 Gene3D - 125 176 - -
Seca8g00953 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Seca8g00953 307 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Seca8g00953 307 FunFam transcription factor MYB1R1 125 176 - -
Seca8g00953 307 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Seca8g00953 307 CDD SANT 126 170 IPR001005 -
Seca8g00953 307 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00953 Seca-Chr8 13128520 13131056 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g00953 Myb_DNA-binding 5.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00953 - - gmx:778039 544.273