Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00935 ATGGATGAGAGTATGTCAGGCTTTTGTATTAGATCTGGAAGTGTCCGTAGTAAAAGTGGCAGCACTGGCACTAAGTGTGGGCGTTGGAATCCCACAACTGAACAAGTTAAACTTCTCACTGAACTCTTCAGGTCAGGGCTCCGCACCCCAAGCACTGATCAGATTCAAAAGATCTCCACTCAGCTCAGCTTTTATGGTAAGATAGAGAGCAAGAATGTCTTCTATTGGTTTCAGAATCATAAGGCCAGGGAAAGACAAAAGCGCCGTAAGGTCTCCTTTGATGACAAAGATGTCATTCATAGAGATAACTCTAACTCTATCAATGCAGCTTCTTCACAAACAGGTTTTGCTGAGATGTATCAAGTTTCAGAGCCTGACAGGGTGATTGAGACTCTTCAACTCTTTCCCTTGAACTCCTTTGGTGAATCAGAAACAGAGAAGGTGAGGGTGCATGCAAGTGAATGCAGGGATAATACAATGTTTTCATACTCAATGGGAGAACAAATGGAACACCCTCCATTAGACTTGCGCTTGAGCTTTTTGTAA 546 0.4304 MDESMSGFCIRSGSVRSKSGSTGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDKDVIHRDNSNSINAASSQTGFAEMYQVSEPDRVIETLQLFPLNSFGESETEKVRVHASECRDNTMFSYSMGEQMEHPPLDLRLSFL. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00935 181 MobiDBLite consensus disorder prediction 1 26 - -
Seca8g00935 181 SMART HOX_1 24 91 IPR001356 GO:0003677
Seca8g00935 181 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Seca8g00935 181 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 16 109 IPR044555 GO:0003700|GO:0099402
Seca8g00935 181 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Seca8g00935 181 FunFam WUSCHEL-related homeobox 11 25 93 - -
Seca8g00935 181 CDD homeodomain 28 88 IPR001356 GO:0003677
Seca8g00935 181 MobiDBLite consensus disorder prediction 10 26 - -
Seca8g00935 181 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Seca8g00935 181 Gene3D - 25 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00935 Seca-Chr8 12665447 12666666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00935 8 181 Wox Gene Family AT3G11260 55.615 5.57e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca8g00935 Homeodomain 6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00935 - - pvu:PHAVU_008G226100g 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00935 8 12665447 12666666 Seca8g00935 8 12665447 12666666 ECH