Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00933 ATGGCGGCGAGCAAGCGCATGGTGTTGCAATTCTCTTCTTCGCAGAGCGTGTCTGCGAAGGTTCACCCTCTCGTTATCTTCAACATCTGCGATTGCTACGTCCGGCGTCCTGACCAAGCGGAGCGCGTTATCGGAACACTACTCGGTTCTGTTCTCCCTGATGGAACCGTCGATATCCGCAATTCCTACGCCGTTCCGCACAACGAGTCCGTCGACCAGGTTGCTTTGGATATTGAGTATCACCGCAATATGTTAGTATCCCACCAAAAAGTGAATCCTAAGGAAGTTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCATGAATTTTATTCTCGAGAAGTACCCAATCCTATACATTTGACTGTAGATACAGGATTCACAACTGGAGAGGGTACCATAAAAGCATATGTTTCAAATAATTTATCTCTTGGAGACCAGCAAATTGCCGCACAGTTTCAAGAAATTCCTTTGGATCTTCGTATGGTTGAAGCTGAACGCATTGGATTCGATACTCTGAAGGCAACTACTGTTGACAAAATCCCCTCTGATTTAGAAGGGATGGAAGCATCAATGGTGCATCTATTAGCCTTGATTGATGACATCTACAAATATGTTGATGATGTTGTGGAAGGGCGTGTTGATCCAGACAACAAAATTGGGAAATTTATATCAGATGCTGTAGGTTCTCTTCCCAAATTGCCCCCATCAGCTCTTGATAAGCTTGTGAATGACAGCTTGCAGGATCACTTGCTCCTACTATATTTATCAAGCATCACAAGGACACAGCTCAGCCTTGCTGAAAAGTTGAATACGGCTGCTCAGATTCTGTGA 855 0.4433 MAASKRMVLQFSSSQSVSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHRNMLVSHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTTGEGTIKAYVSNNLSLGDQQIAAQFQEIPLDLRMVEAERIGFDTLKATTVDKIPSDLEGMEASMVHLLALIDDIYKYVDDVVEGRVDPDNKIGKFISDAVGSLPKLPPSALDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00933 284 CDD MPN_eIF3f 20 277 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca8g00933 284 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 10 281 - -
Seca8g00933 284 ProSiteProfiles MPN domain profile. 19 150 IPR037518 -
Seca8g00933 284 Gene3D Cytidine Deaminase, domain 2 6 185 - -
Seca8g00933 284 SMART pad1_6 18 149 IPR000555 GO:0005515|GO:0008233|GO:0008237
Seca8g00933 284 Pfam Maintenance of mitochondrial structure and function 171 277 IPR024969 -
Seca8g00933 284 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 17 280 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca8g00933 284 FunFam Eukaryotic translation initiation factor 3 subunit F 7 185 - -
Seca8g00933 284 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 122 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00933 Seca-Chr8 12645270 12649728 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00933 2 284 Eukaryotic Initiation Factors Gene Family AT2G39990 74.914 3.41e-155 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00933 K03249 - gmx:100786716 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00933 8 12645270 12649728 Seca8g00933 8 12645270 12649728 ECH