Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00931 ATGGCGGCGAGCAAGCGCACCGTGTTGCAATTCTCTTCTTCGCAGAGCGTGTCTGCTAAGGTCCACCCTCTCGTTATCTTCAACATCTTCGATTGCTATGTCCGGCGTCCTGACCAAGCGGAGCGCGTCATCGGAACACTACTCGGCTCCGTTCTCCCCGACGGAACCGTCGATATCCGCAATTCCTACGCCGTTCCGCACAACGAGTCCGTCGACCAGGTTGCTTTGGATATTGAGTATCACCGCAATATGTTAGTATCCCACCAAAAAGTGAATCCTAAGGAAGTTATAGTTGGATGGTACTCAACTGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCATGAATTTTATTCTCGAGAAGTACCCAATCCTATACATTTGACTGTTGATACAGGATTCACAACTGGAGAGGGTACCATAAAAGCATATGTTTCAAATAATTTATCTCTTGGAGACCAGCAAATTGCCGCACAGTTTCAAGAAATTCCTTTGGATCTTCGTATGGTTGAAGCTGAACGCATTGGATTCGATACTCTGAAGGCAACTACTGTTGACAAAATCCCCTCTGATTTAGAAGGGATGGAAGCATCAATGGTGCATCTATTAGCCTTGATTGATGACATCTACAAATATGTTGATGATGTTGTGGAAGGGCGTGTTGATCCAGACAACAAAATTGGGAAATTTATATCAGATGCTGTTGGTTCCCTTTCCAAATTGCCCTCATCAGCTTTTGATAAGCTTGTGAATGACAGCTTGCAGGTATGA 771 0.4475 MAASKRTVLQFSSSQSVSAKVHPLVIFNIFDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHRNMLVSHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTTGEGTIKAYVSNNLSLGDQQIAAQFQEIPLDLRMVEAERIGFDTLKATTVDKIPSDLEGMEASMVHLLALIDDIYKYVDDVVEGRVDPDNKIGKFISDAVGSLSKLPSSAFDKLVNDSLQV. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00931 256 ProSiteProfiles MPN domain profile. 19 150 IPR037518 -
Seca8g00931 256 Gene3D Cytidine Deaminase, domain 2 6 185 - -
Seca8g00931 256 SMART pad1_6 18 149 IPR000555 GO:0005515|GO:0008233|GO:0008237
Seca8g00931 256 Pfam Maintenance of mitochondrial structure and function 171 253 IPR024969 -
Seca8g00931 256 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 122 IPR000555 GO:0005515|GO:0008233|GO:0008237
Seca8g00931 256 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 11 255 - -
Seca8g00931 256 FunFam Eukaryotic translation initiation factor 3 subunit F 7 185 - -
Seca8g00931 256 CDD MPN_eIF3f 20 255 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00931 Seca-Chr8 12606181 12610477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00931 2 251 Eukaryotic Initiation Factors Gene Family AT2G39990 72.093 1.10e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00931 K03249 - gmx:100786716 454.136