Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00925 ATGGAAATGTCTATGGTACAGCAGGTTGTTCCTAGGCAAGAAAACTATGCTCAAAGTCGAGCAACTGCTCTGCACAATGTAGAATCTACTATCACAGAACTCAGTGGGATCTTCTCGCATTTGGCTACAATGGTTGCTCATCAAGGGGAGCTAGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCAACAGAATATCATCAAATAGGTGGCTTCTAATCAAGATATTTGGCATTCTGATATTTTTCCTGATGATCTTCATATTTTTCGTGGCCTAA 321 0.405 MEMSMVQQVVPRQENYAQSRATALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNRISSNRWLLIKIFGILIFFLMIFIFFVA. 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00925 106 CDD SNARE_syntaxin5 17 92 - -
Seca8g00925 106 ProSitePatterns Syntaxin / epimorphin family signature. 20 59 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca8g00925 106 PANTHER SYNTAXIN 4 101 IPR045242 -
Seca8g00925 106 Gene3D - 5 106 - -
Seca8g00925 106 SMART tSNARE_6 9 76 IPR000727 -
Seca8g00925 106 Pfam SNARE domain 51 102 IPR000727 -
Seca8g00925 106 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 14 76 IPR000727 -
Seca8g00925 106 SUPERFAMILY t-snare proteins 7 69 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00925 Seca-Chr8 12458940 12461883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00925 1 106 SNARE and Associated Proteins AT5G05760 75.472 1.82e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00925 K08490 - gmx:100777383 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00925 8 12458940 12461883 Seca8g00925 8 12458940 12461883 ECH