Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00921 ATGATGGCTCTAACTCTGATCATATTGCATCTCAGTGTTGTTTCACAAACAATGGTGTATGTGATGCCAGCTACAGCTTTGAATTCAGAGACTGATAAACTCACTTTGCTTGCTTTGAAGGAAAAGCTAACCCATGGCATGCCTAATTCTCTGCCATCATGGAATGAATCTCTGAATTTCTGTGAATGGAAGGGTGTTAAATGTGGTCATCGACACATGAGAGTCACTGCCTTGCATTTGGAAAATGAAGATTGGGGTGGTACTCTTGGACCAGCCTTGGCAAATCTAACCTTCCTCAGAAACCTCAATCTTTCAAACATCAACTTGCATGGTCAAATTCCAATACAAGTTGGTCATTTGAAGCGGTTACAGGTTCTTGACTTAAGCAGGAACAAGCTTCAGGGAGAGGTTCCTATGGAGCTTACTAACTGCACCAATCTCAAGGTAATTAACTTGTCATACAATAATCTCACTGGCAAAGTTCCCTCATGGTTTGGATCTATGATTCACCTTATTGATTTGCATCTCCTTGCAAACAATCTAGTTGGGACTATCCCACCTTCCTTGGGAAATATTTCATCATTACAGATTATAGCACTTTCAAGAAATAATTTGGAAGGAAACATACCTCATGAGTTAGGTACTCTTCCATCAAATATAGATTTTGCTTTTCTCAAACTACAAGCATTCTTGGTTGGAGGGAATCACTTCACTGGTGCCTTCCCTTCTTCAATATCCAACATCACTGAATTGGAAGGGTTTGATATATCCTCAAATGGTTTTAGTGGGCCAATACCTCCTACTTTGGGAAGCTTGTACAAACTTGAGAGGTTTCACATTGCTTATAATAACTTTGGGAGTGGAAGAGCTCATGATTTGGATTTCCTTTCCTCATTAATCAATTGTACTCAATTGCAAAAGCTTATATTGGATGGCAATGGGTTTGGTGGTGTGTTGCCAGATCTTATAGGCAACTTATCTATCCATCTCGATTTAGTTACAATGGGGGGTAATCAAATATCTGGTGTCATACCTGAAGGAACTGGACAACTAATCGGTTTAACTGAATTTGATATGACAGAGAATTTCCTTGAGGGAACAATTCCAGATTCAATTGGAAAGCTTAAAAATCTAGGGAGATTGACCTTGCAAGAGAACAAATTATCTGGTAATATTCCTGCTGTTATTGGCAATCTTACTATGTTGTCTGAACTTCATTTGCTCAGCAATGAATTTGAAGGAAGCATTCCATTTACCCTCAGATACTGCACACAGTTGCAGACAATTGGTGTTTCTGGGAACAACTTAAGTGGTGATATTCCTATTCAAACATTTGGCCACCTAGAAGATTTGATAAATCTTGACTTGTCCAACAACACTTTAACTGGTTCCATTCCTTTAGAGTTTGGTGAGTTGAAGCATCTTTCCATATTGTATCTATTTGAAAACAAGTTGTCTGGTGAAATTCCAAAGGAACTTGTTGCTTGTTTGGCATTAACAGAGCTGGTGCTGGAGAGAAACTTTTTCTATGGAAGTATACCTTCCTTTTTGGGCTCTTTAAGTTCCCTTGAACTCTTAGATCTTTCTTACAACAACTTCTCAAGCACAATCCCCCCTGAACTAGAAAATCTTACATTGCTTGATTCTCTGGACTTGTCCTTTAACCAACTGTATGGTGAGGTTCCCAGAGGAGGTGTCTTCAAAAATGTCACAGCAATTTCACTAATTGGAAATAAGCATCTTTGTGGGGGAATACCTCAACTGAACCTGCCTGCATGCTCTATGTCTCCTTCAAAGAAACACCACAAGATGTCTCTTAAAAAGAAAGTTATCCTCATCATTGTAATTGGTGGGCTTTTTATGTCTTGTATAGTTTTTATCAGCATCTATTATCTCAAGAAAAAGCCCAAGGAGTTATCTTCTTTACCATCTCTTCAAAATAGGTACTTGAAGGTTTCTTATGGAGAGCTACATGAAGCAACCAATGGATTTTCTTCATCCAATTTAGTAGGCACTGGAGGCTTTGGTTCTGTATATAGAGGATCTCTTCTCAATTTTGAAAGACCTATTGCAGTAAAAGTGTTGAATCTTGCAACACGTGGGGCATCAAAGAGTTTCACTGCTGAATGCAAAGCTCTGGGGCAGATCAAGCACCGGAATCTTCTCAATATCTTGACTTGTTGTTCAAGTGTTGATTATAATGGTGAAGATTTCAAGGCTATAGTTTATGAGTTCATGCCTAATGGGAGTCTAGAAAGCTTGTTGCATGGCAATGACCAACATGAGCCTAGAAATCAAAATCTCAACCTTACACAAAGGATGAATATTGCTCTTGATGTAGCTCAGGCATTGGATTATCTTCACAATGATTCAGAGGAAGGTGTAGTTCACTGTGACATTAAGCCAAGCAACGTTCTTCTTGATGATGACATTGTTGCCCACTTGGGAGACTTTGGGTTAGCTAGGCTCCTTCATGTGACTATGGGGCACTCAAGTAGAGATCAAGTTAGTTCCTCTGCAATTAAGGGAACTATTGGATATGTTCCCCCAGAGTATGGAGCAGGTGGCCCAGTAACACCACAAGGAGATATCTACAGCTACGGAATTCTTCTGTTGGAGATGCTCACAAGAAAGAAACCAACAGATAACCTGTTTGGTGAGGGTCTAAGCCTACACAAATTCTGTAAGATGGCAATTCCGGAAGGAATCACTGAGATAGTGGATCCACGTTTGCTTGTCCCATTTGCTGAAGAACATATTGGGGTTGTGGAAGACAACATTAGGGAGTGTCTGGTGTCCTTTGCTAGAATTGGAGTTGCATGTTCTGAGGATTTCCCTGCTGAACGAATGCACATAAAAGATGTTATAGTGGAGTTACATGCAATTAAACAAAAGCTGCCCCTCTAG 2907 0.398 MMALTLIILHLSVVSQTMVYVMPATALNSETDKLTLLALKEKLTHGMPNSLPSWNESLNFCEWKGVKCGHRHMRVTALHLENEDWGGTLGPALANLTFLRNLNLSNINLHGQIPIQVGHLKRLQVLDLSRNKLQGEVPMELTNCTNLKVINLSYNNLTGKVPSWFGSMIHLIDLHLLANNLVGTIPPSLGNISSLQIIALSRNNLEGNIPHELGTLPSNIDFAFLKLQAFLVGGNHFTGAFPSSISNITELEGFDISSNGFSGPIPPTLGSLYKLERFHIAYNNFGSGRAHDLDFLSSLINCTQLQKLILDGNGFGGVLPDLIGNLSIHLDLVTMGGNQISGVIPEGTGQLIGLTEFDMTENFLEGTIPDSIGKLKNLGRLTLQENKLSGNIPAVIGNLTMLSELHLLSNEFEGSIPFTLRYCTQLQTIGVSGNNLSGDIPIQTFGHLEDLINLDLSNNTLTGSIPLEFGELKHLSILYLFENKLSGEIPKELVACLALTELVLERNFFYGSIPSFLGSLSSLELLDLSYNNFSSTIPPELENLTLLDSLDLSFNQLYGEVPRGGVFKNVTAISLIGNKHLCGGIPQLNLPACSMSPSKKHHKMSLKKKVILIIVIGGLFMSCIVFISIYYLKKKPKELSSLPSLQNRYLKVSYGELHEATNGFSSSNLVGTGGFGSVYRGSLLNFERPIAVKVLNLATRGASKSFTAECKALGQIKHRNLLNILTCCSSVDYNGEDFKAIVYEFMPNGSLESLLHGNDQHEPRNQNLNLTQRMNIALDVAQALDYLHNDSEEGVVHCDIKPSNVLLDDDIVAHLGDFGLARLLHVTMGHSSRDQVSSSAIKGTIGYVPPEYGAGGPVTPQGDIYSYGILLLEMLTRKKPTDNLFGEGLSLHKFCKMAIPEGITEIVDPRLLVPFAEEHIGVVEDNIRECLVSFARIGVACSEDFPAERMHIKDVIVELHAIKQKLPL. 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00921 968 ProSiteProfiles Protein kinase domain profile. 664 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00921 968 FunFam Lrr receptor-like serinethreonine-protein kinase gso2 222 300 - -
Seca8g00921 968 Gene3D Phosphorylase Kinase; domain 1 627 745 - -
Seca8g00921 968 SUPERFAMILY L domain-like 330 583 - -
Seca8g00921 968 CDD STKc_IRAK 670 959 - -
Seca8g00921 968 Pfam Leucine rich repeat 425 485 IPR001611 GO:0005515
Seca8g00921 968 Pfam Leucine rich repeat 499 557 IPR001611 GO:0005515
Seca8g00921 968 PRINTS Leucine-rich repeat signature 451 464 - -
Seca8g00921 968 PRINTS Leucine-rich repeat signature 520 533 - -
Seca8g00921 968 FunFam Inactive leucine-rich repeat receptor-like protein kinase 301 593 - -
Seca8g00921 968 SMART serkin_6 664 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00921 968 ProSitePatterns Protein kinases ATP-binding region signature. 670 693 IPR017441 GO:0005524
Seca8g00921 968 SUPERFAMILY L domain-like 30 285 - -
Seca8g00921 968 Pfam Protein kinase domain 666 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00921 968 SUPERFAMILY Protein kinase-like (PK-like) 637 959 IPR011009 -
Seca8g00921 968 Gene3D Ribonuclease Inhibitor 143 226 IPR032675 -
Seca8g00921 968 Gene3D Ribonuclease Inhibitor 291 602 IPR032675 -
Seca8g00921 968 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 506 947 - -
Seca8g00921 968 SMART LRR_typ_2 544 569 IPR003591 -
Seca8g00921 968 SMART LRR_typ_2 120 144 IPR003591 -
Seca8g00921 968 SMART LRR_typ_2 472 496 IPR003591 -
Seca8g00921 968 SMART LRR_typ_2 520 543 IPR003591 -
Seca8g00921 968 SMART LRR_typ_2 192 216 IPR003591 -
Seca8g00921 968 SMART LRR_typ_2 375 399 IPR003591 -
Seca8g00921 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 795 807 IPR008271 GO:0004672|GO:0006468
Seca8g00921 968 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Seca8g00921 968 Pfam Leucine Rich repeats (2 copies) 121 158 IPR025875 -
Seca8g00921 968 Gene3D Transferase(Phosphotransferase) domain 1 746 967 - -
Seca8g00921 968 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 746 967 - -
Seca8g00921 968 FunFam LRR receptor-like serine/threonine-protein kinase EFR 635 745 - -
Seca8g00921 968 Gene3D Ribonuclease Inhibitor 227 290 IPR032675 -
Seca8g00921 968 Gene3D Ribonuclease Inhibitor 31 142 IPR032675 -
Seca8g00921 968 FunFam Leucine-rich repeat receptor-like protein kinase 29 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00921 Seca-Chr8 12386381 12389907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00921 26 966 Receptor kinase-like Gene Family AT3G47570 43.001 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca8g00921 Pkinase 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00921 - - gmx:100776429 1253.04