Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00920 ATGCACACATTGGCCAATACCAAAATGATGGCTCTGCCTTTGATCATATTGCTTCTCAGTGTTGTTTCACAAACAATGGTGTATGTGATGCCAACTACAGCTTTGAGTTCAGAGACTGATAAACTCACTTTGCTTGCTTTGAAGGAAAAGCTTACTAATGGCATGCCTGATTCTCTGCCATCATGGAATGAATCTCTGCATTTCTGTGAATGGCAGGGTGTTACATGCGGTCATCGCCACATGAGAATCACTGCCTTGCATTTGGAAAATGAAGACTGGGGTGGTACTCTTGGACCCACCTTGGCAAATCTAACCTTCCTCAAAATGCTCAAACTTTCAAACATCAACCTGCATGGTCAAATTCCAACACAAATCGGTCGTTTGAAAAGGTTGCAGGTTCTTGACTTAAGCAGGAACAATCTTCAGGGAGAGGTTCCTATGGAGCTTACCAACTGCACCAGTCTCCAAGTAATTAACTTGTTGTACAATCAACTCACTGGAAAAGTTCCCTCATGGTTTGGATCTATGATTCACCTTACTAAGTTGCTTCTTGGTGCCAATAATCTAGTTGGTACTATCCCACCTTCTTTGGGAAATATGTCATCACTACTGAATATAACACTTGCAAGAAATCAATTGGAAGGAAGCATACCTTATGCTTTGGGTAGGTTGTCAAATTTGAAAGAGTTGAATCTGGGTTTAAATAACTTATCAGGTATAATCCCTCATTGTCTCTACAACCTTTCAAATATTCAAGTTTTTGTTCTCGGGATAAACCAGTTATTTGGTACTCTTCCATCAAATATACATCTTGCTTTTCCCAATCTTCAAGCATTCCTGGTAGGATGGAACCACTTAACCGGGACTTTCCCGTCTTCAATATCCAACATCACTGGATTACGATGGTTTGATATATCCTCAAATGGTTTTAATGGGCCAATACCTCCTACTTTGGGAAGCTTAAACAAACTTCGGAGGTTCAACATTGGTTATAATAATTTCGGGAGTGGAAGAGCTCACGATCTGGATTTCCTTTCCTCACTTACCAATTGTACTCAATTGCAAAAGCTTATTTTGGATAGCAATAGATTTGGTGGTGCGTTGCCAGATTTTGTAGGCAACTTATCCACACATCTAAATTTGCTTAGTATGGAAAGGAATCAAATATCTGGAGTGATACCTGAAGGAATTGGACAACTAATCGGTTTAACTTCCTTTGATTTGATGGAGAATTTCCTTGAGGGAACAATTCCAGATTCAATTGGAGAGCTTAAGAATCTAGGAAGATTGGCCTTGCAAGAAAACAAATTATCTGGAAAAATCCCTGCTGTTATTGGCAATCTTACTATGTTGTCTGAACTTTATCTGCGCACCAATCAATTTGAAGGAAGCATTCCATTTACCCTCAAATACTGCACCCGGTTGCAGTCATTTGGTGCATGTGAGAACAACTTAAGTGGTGATATACCTAATCAAACATTTGGCTATCTAGAAAGCTTAATAGAGCTTGACTTGTCCAATAACTCCTTATCAGGTTCCATTCCTTCAGAGTTTGGTAACTTGAAGCAGCTTTCCATATTATATCTAAGCGCAAACAAGCTGTCTGGTGAAATTCCAAAGGAACTTGGTGCTTCTTTGGAATTAACAGAGCTGGTGCTGGAGAGAAACATTTTCAATGGAACTATACCTTCCTTCTTGGGCTCCTTAAGATCCCTTGAAATCTTAGATCTTTCTTACAACAATTTCTCAAGCAAAATACCCCATGAACTACAAAATCTAACATTGCTGAATTCTTTGGACTTGTCTTTTAACCATCTCTATGGTGAGGTCCCCACAGGAGGTGTCTTCAATAACGTCACAGCAATTTCACTAATTGGAAATAAGAATCTTTGTGGGGGGATACCTCAATTGAAGCTGCCTGCATGCTCTATCTCTCCTTCAAAGAAGCACAAGACGTCTCTTGAGAAGAATGTTATACTTATCACTGTAGTTGGCGGGGTTTTGATGTCTTTAATAGTATTTATCAGTATCTGTTATCTCAGAAAAAAGGCCAAAACATTATCTTCTTTACCATTTCTTCAAAATAGGTACTTGAAGGTTTCTTATGGAGAGCTACATGAAGCAACCAATGGATTTTCTTCATCCAATTTAGTAGGCACAGGAAGCTTTGGTTCTGTATACAAAGGATCTCTTGTCCATTTTGAAGGACCTATTGCAGTAAAGGTGTTGAATCTTGAAACACGTGGAGCATCAAAGAGTTTCACTGCTGAATGCAAAGCTCTGGGACAGATCAAGCACCGGAATCTTCTCAATATCTTGACTTGTTGTTCAAGTGTTGATTATAATGGTGAAGATTTCAAGGCTATAGTTTATGAGTTCATGCCTAATGGGAATCTAGAAAGCTTGTTGCATAGCAATGATCAACATGAGCCTAGAAATCTAAATCTCAACCTTACTCAAAGGGTTAATATTGCCCTTGATGTAGCTCAGGCATTGGATTATCTTCACAATGATTCAGAGGAAGGTGTAGTTCACTGTGACATTAAGCCAAGCAACGTTCTTCTTGATGATGACATTGTTGCCCACTTGGGAGACTTTGGGTTAGCTAGGCTCCTTCATGTGACCATGGGGCACTCAAGTAGAGATCAAGTTAGTTCCTCTGCAATTAAGGGAACTATTGGATATGTTCCTCCAGAGTATGGAGCAGGTGGCACAGTAACACCACAAGGAGATATCTACAGCTACGGAATTCTTCTGTTGGAGATGCTCACCGGAAAGAAACCTACAGATAGCATGTTTGGTGAGGATTTAAGCTTACATAAGTTGTGTAAGATGGCAATTCCAGAAGAAATCACTGAGATAGTGGATTCACGTTTGCTTATCCCATTTGCTCAAGAACAGACAGGGGTTTTGGAAAACAACAACAAGGAGTGTCTGGTGTCCTTTGCTAGAATTGGAGTTGCATGTTCTGAGGATTTCCCTGCTGAACGAATGCACATAAAAGATGTTATAGTGGAGTTACATGCAACTAAACAAAAACTACCCTGCTAG 3051 0.3976 MHTLANTKMMALPLIILLLSVVSQTMVYVMPTTALSSETDKLTLLALKEKLTNGMPDSLPSWNESLHFCEWQGVTCGHRHMRITALHLENEDWGGTLGPTLANLTFLKMLKLSNINLHGQIPTQIGRLKRLQVLDLSRNNLQGEVPMELTNCTSLQVINLLYNQLTGKVPSWFGSMIHLTKLLLGANNLVGTIPPSLGNMSSLLNITLARNQLEGSIPYALGRLSNLKELNLGLNNLSGIIPHCLYNLSNIQVFVLGINQLFGTLPSNIHLAFPNLQAFLVGWNHLTGTFPSSISNITGLRWFDISSNGFNGPIPPTLGSLNKLRRFNIGYNNFGSGRAHDLDFLSSLTNCTQLQKLILDSNRFGGALPDFVGNLSTHLNLLSMERNQISGVIPEGIGQLIGLTSFDLMENFLEGTIPDSIGELKNLGRLALQENKLSGKIPAVIGNLTMLSELYLRTNQFEGSIPFTLKYCTRLQSFGACENNLSGDIPNQTFGYLESLIELDLSNNSLSGSIPSEFGNLKQLSILYLSANKLSGEIPKELGASLELTELVLERNIFNGTIPSFLGSLRSLEILDLSYNNFSSKIPHELQNLTLLNSLDLSFNHLYGEVPTGGVFNNVTAISLIGNKNLCGGIPQLKLPACSISPSKKHKTSLEKNVILITVVGGVLMSLIVFISICYLRKKAKTLSSLPFLQNRYLKVSYGELHEATNGFSSSNLVGTGSFGSVYKGSLVHFEGPIAVKVLNLETRGASKSFTAECKALGQIKHRNLLNILTCCSSVDYNGEDFKAIVYEFMPNGNLESLLHSNDQHEPRNLNLNLTQRVNIALDVAQALDYLHNDSEEGVVHCDIKPSNVLLDDDIVAHLGDFGLARLLHVTMGHSSRDQVSSSAIKGTIGYVPPEYGAGGTVTPQGDIYSYGILLLEMLTGKKPTDSMFGEDLSLHKLCKMAIPEEITEIVDSRLLIPFAQEQTGVLENNNKECLVSFARIGVACSEDFPAERMHIKDVIVELHATKQKLPC. 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00920 1016 FunFam LRR receptor-like serine/threonine-protein kinase EFR 683 793 - -
Seca8g00920 1016 Gene3D Ribonuclease Inhibitor 39 148 IPR032675 -
Seca8g00920 1016 Gene3D Ribonuclease Inhibitor 273 340 IPR032675 -
Seca8g00920 1016 Gene3D Ribonuclease Inhibitor 149 202 IPR032675 -
Seca8g00920 1016 Gene3D Ribonuclease Inhibitor 203 272 IPR032675 -
Seca8g00920 1016 PANTHER RECEPTOR-LIKE PROTEIN 55 408 1010 - -
Seca8g00920 1016 Pfam Leucine rich repeat 402 461 IPR001611 GO:0005515
Seca8g00920 1016 Pfam Leucine rich repeat 547 606 IPR001611 GO:0005515
Seca8g00920 1016 Pfam Leucine rich repeat 482 534 IPR001611 GO:0005515
Seca8g00920 1016 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Seca8g00920 1016 Pfam Protein kinase domain 714 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00920 1016 ProSiteProfiles Leucine-rich repeat profile. 571 594 IPR001611 GO:0005515
Seca8g00920 1016 SUPERFAMILY RNI-like 275 612 - -
Seca8g00920 1016 SMART LRR_typ_2 224 247 IPR003591 -
Seca8g00920 1016 SMART LRR_typ_2 128 152 IPR003591 -
Seca8g00920 1016 SMART LRR_typ_2 424 448 IPR003591 -
Seca8g00920 1016 SMART LRR_typ_2 569 592 IPR003591 -
Seca8g00920 1016 SMART LRR_typ_2 176 200 IPR003591 -
Seca8g00920 1016 SMART LRR_typ_2 521 545 IPR003591 -
Seca8g00920 1016 SMART LRR_typ_2 593 618 IPR003591 -
Seca8g00920 1016 SMART LRR_typ_2 497 520 IPR003591 -
Seca8g00920 1016 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 794 1015 - -
Seca8g00920 1016 ProSiteProfiles Protein kinase domain profile. 712 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00920 1016 SMART serkin_6 712 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00920 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Seca8g00920 1016 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 77 342 - -
Seca8g00920 1016 ProSitePatterns Protein kinases ATP-binding region signature. 718 741 IPR017441 GO:0005524
Seca8g00920 1016 Gene3D Ribonuclease Inhibitor 341 651 IPR032675 -
Seca8g00920 1016 Gene3D Transferase(Phosphotransferase) domain 1 794 1014 - -
Seca8g00920 1016 Gene3D Phosphorylase Kinase; domain 1 675 793 - -
Seca8g00920 1016 SUPERFAMILY L domain-like 37 334 - -
Seca8g00920 1016 PRINTS Leucine-rich repeat signature 569 582 - -
Seca8g00920 1016 PRINTS Leucine-rich repeat signature 500 513 - -
Seca8g00920 1016 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 648 - -
Seca8g00920 1016 SUPERFAMILY Protein kinase-like (PK-like) 687 1007 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00920 Seca-Chr8 12371213 12374775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00920 29 1014 Receptor kinase-like Gene Family AT3G47570 43.613 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca8g00920 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00920 - - gsj:114384365 1456.04