Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00907 ATGATGAAGAACAAACCAGAGTCACCCTCTTCCGTCGCCACAACCACCTTCATTCTCTCCGTCGTCTTTATCCTCTTCTTTTTATTACCATTATGCCACTCTCTCGGCTCCGGCACCACCCTCGCCGTCGTTGACGCCACCGCCACTGTCTGCGGCGTGGTGGCAGAGCAACCTACACGGCGCATTGAGTGCTACCGTCGCGGCCATGTCATCGCCGCCGCGCCTAACATCTCGTTCTCGGCGATCTCCGGCGGGAGGAGCTACTTCTGCGGCCTGAGGTCCGGCAACTACACTCTCCTCTGTTGGGATACCCTCTCTTCCTTCAAAAGCAAGAGACTTTACAACAATGGCACTGTTTTATTCGAGAATCTCTCTGTTGGTGATGCACAGGTTTGCGCCACCGTCGTCGGCGCCGGAACGGTGTCATGTTGGAGAGTCGATAAAGCGTTTGAATTGCCATCTGGGTCGGAGCAGTTTTCGTCTATCACATCTGGGTCGGGTTTCTCTTGTGGTATTGTGAGGAACGGTTCTTGGGTTCGGTGTTGGGGGAATGAGTCTATTGCTAGGAAGATGGAGAATGCGTTTGGAAACATGTCTATGGTGAGTCTTGTGGCTGGTGAGTCACATGTTTGTGGATTGAATTCAACTGGGTTTTTGGTTTGTAAAGGAAGTAACAGTTTTGGTCAAATAGATGTTCCTCAAGGTGGGCCTTTGGAGTTTTCTGGGTTGGCATTAGGTGCTGAGCATAGCTGTGCTATTAGGAGATCCAATGGTTCTGTTGTTTGTTGGGGTGGTAGAGGATTGTTCTCTGTTAATGTTACACAAGGTATTTCTTTTGAGATCATTGTTTCTGGGTCTAATTTCACTTGTGGATTGACAACAAACAATTTTTCAGTTATTTGTTGGGGTCCTGGTTGGTCTAATGGTCCTGATTCTGGTTCTGGTTCTGGTTCAAGTTTTGAGCTTCCCTTGTCTCCTATTCTTCCAGGGCCTTGTGTTCAATCTTCTTGTAGTGAATGTGGTATATATCCTCAATCTCAATCTCTGTGTTCTGGCACTGGTAACATTTGCAAGCCACAACCTTGTTGGCCTCAAATGCCGGTGCCTACACCACCGCCACCGCGGATACCGCCATTGGTGCCACCGGCGGCTCCACCTTCTCAGTCAAAGACCTTGACAAGGGGCTTATTGGCATTTGCCATTGTTGGATCAGTTGGTGCTGTTGCTGGTATTTGCACAGTTTTGTATTGCTTGTGGACTGGTGTGTGTTTTGGGAATAAGAAAATTCACAATTCTGTGCAACCAACAATTACTAGAGGTGGAAGTTTCAATGGTGGTGCTATTTCAAATAATAGTCCACCTTCAAGATCATCCACCATTAGGCGTCAAGGGTCAAGGATAATGAGGCGCCAGAGGAGTGGAACTTCTTCAACAAAACATCCAGATAGGGCAGAGGAATTCACCTTGGTTGAGCTTATTGCAGCCACCAACAATTTCTCACTTGAGAACAAGATTGGTGCTGGAAGCTATGGTGTTGTGTATAAAGGAAAACTTGCTGATGGCCGTGAGGTAGCAATCAAAAGGGGTGAAACTTGTAATAAGATGAAGATGTTTCAAGAGAAAGAAAGTGCATTTGAGTCAGAATTGGCCTTTTTGTCCCGTTTACACCACAAGCACTTGGTTAGGCTAGTTGGATTCTGTGAAGAGAAAGATGAGAGGCTCTTGGTATATGAGTACATGAAGAATGGGGCATTATATGATCATTTGCATGACAAAAACAATGTGGAAAAGAATAGTAGTGTGTTGAATTCTTGGAGAATGAGGATCAAAATTGCGCTGGATGCTTCGCGAGGAATTGAATATCTACATAACTATGCAGTTCCATCTATAATTCACAGAGATATCAAGTCTTCTAACATTCTTATTGACGCGAATTGGATGGCAAGAGTGTCTGATTTTGGATTGTCATTGATGAGTCCAGATTCTGATCATGATTACAGGCCAATTAAGGCAGCAGGAACAGTTGGATACATTGATCCTGAATATTATGGTCTAAATGTGTTGACAGCAAAGAGTGATGTCTATGGGCTTGGAGTGGTACTACTAGAACTTATAACAGGAAAAAGAGCTATATTCAAGAATGGTGAAAATGGAGGCACCCCAGTGAGTGTGGTAGATTTTGCAGTGCCTGTAATTATGGCAGGAGAATTGGCAAAAATTTTGGACCCAAGGGTTGAACCACCAGAGTTGAATGAAACAGAAGCAGTGGAGCTTGTGGCTTATACTGCTATGCATTGTGTAAATTTGGAGGGGAAAGATAGACCAACAATAGCTGACATTGTAGCCAATTTGGAGCGTGCTTTGGCTCTTTGTGATAGTAGTCATGGCAGCATTTCTAGTGCTACAATCTCTCTTGGATCTGACTGA 2427 0.4508 MMKNKPESPSSVATTTFILSVVFILFFLLPLCHSLGSGTTLAVVDATATVCGVVAEQPTRRIECYRRGHVIAAAPNISFSAISGGRSYFCGLRSGNYTLLCWDTLSSFKSKRLYNNGTVLFENLSVGDAQVCATVVGAGTVSCWRVDKAFELPSGSEQFSSITSGSGFSCGIVRNGSWVRCWGNESIARKMENAFGNMSMVSLVAGESHVCGLNSTGFLVCKGSNSFGQIDVPQGGPLEFSGLALGAEHSCAIRRSNGSVVCWGGRGLFSVNVTQGISFEIIVSGSNFTCGLTTNNFSVICWGPGWSNGPDSGSGSGSSFELPLSPILPGPCVQSSCSECGIYPQSQSLCSGTGNICKPQPCWPQMPVPTPPPPRIPPLVPPAAPPSQSKTLTRGLLAFAIVGSVGAVAGICTVLYCLWTGVCFGNKKIHNSVQPTITRGGSFNGGAISNNSPPSRSSTIRRQGSRIMRRQRSGTSSTKHPDRAEEFTLVELIAATNNFSLENKIGAGSYGVVYKGKLADGREVAIKRGETCNKMKMFQEKESAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVEKNSSVLNSWRMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDANWMARVSDFGLSLMSPDSDHDYRPIKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELITGKRAIFKNGENGGTPVSVVDFAVPVIMAGELAKILDPRVEPPELNETEAVELVAYTAMHCVNLEGKDRPTIADIVANLERALALCDSSHGSISSATISLGSD. 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00907 808 FunFam Serine/threonine-protein kinase-like protein CCR4 580 802 - -
Seca8g00907 808 FunFam serine/threonine-protein kinase-like protein CCR1 468 579 - -
Seca8g00907 808 MobiDBLite consensus disorder prediction 440 462 - -
Seca8g00907 808 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 197 794 IPR044815 GO:0004674
Seca8g00907 808 SUPERFAMILY RCC1/BLIP-II 33 265 IPR009091 -
Seca8g00907 808 Gene3D Transferase(Phosphotransferase) domain 1 580 797 - -
Seca8g00907 808 ProSiteProfiles Protein kinase domain profile. 499 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00907 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Seca8g00907 808 Gene3D Phosphorylase Kinase; domain 1 460 579 - -
Seca8g00907 808 SMART serkin_6 499 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00907 808 SUPERFAMILY Protein kinase-like (PK-like) 476 784 IPR011009 -
Seca8g00907 808 Pfam Protein kinase domain 500 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00907 808 Gene3D - 154 355 IPR009091 -
Seca8g00907 808 MobiDBLite consensus disorder prediction 440 481 - -
Seca8g00907 808 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Seca8g00907 808 CDD STKc_IRAK 505 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00907 Seca-Chr8 12086977 12089403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00907 10 808 Receptor kinase-like Gene Family AT3G55950 60.121 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Seca8g00907 Pkinase 9.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00907 - - gmx:100782916 1261.13