Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00903 ATGGCCATGGCTGTGTCCAACGGCGTCGAAGCTGTGTTTGAGTTTCTGAGGAAGAATGGATTATCGGAAGCAGAGTCTGCTCTCAGAGAAGACATCATCGAGAAGAGTGATGATCTCGCTTCCTTTGACTACGAGAAGTTCTTCTTTCCGATGGTTCCGCCTCCGCCTCCGGTAAGGGTCCGGTCGTTTTCCCGGCCGTCGGAGCTTCCTGTTACCGGAGAATGCTCCAAATCGAGCTCTGCTTCGTCGGAGGATCAGTTTGTTAGCATCGGTTCACCTGCTTCTCGTGTTTCTTCTTTAGAATTCATCAATCCTTATGGAATCCGTTCCTCATCTCAGACTCAGAATGATTCTGACTCTTCATCTGATAGATTATCCCAATTTGGCACAGCGCGTGATTATCATGACTTTGATATGCAAAATGAACCATATTGGTATAATGAAAAAGATGATGACTATTTCATGACTCCTAGTTTTGAAGGGCCGGATTTCTTTGGGTGTCAAAGTGAAGATAAGTTTGTCATGACAGCAGAAATGGAAAATCAGCAACACAATTCTCTGGATCTTGATTACAACTATGAAGAACTTCAATTAGAGGGGAATGATGGTTACATGGACAAGGCATGCCTTTTTAATCCTTCCTCTGTAGGGGATGAAAAAGTGACTTATTCAAAAGGCTGTTGTCATGTGGATAACAAAGATCAGTTTGACGTGGAATTAGAGGGCAAGGCTGAGAAACACACTGACACTGTTGCCTATAGTTGTGAAGTTCCACTTTGCAAAAGCTGTCCAGGTTCAGGAGGTGATTCTTGTAGTGGGGACCCTAATTTGAAGGAAATCCATCTGAATGACTTTGAATTGAAGGTTGTTAGGGATATTAACTCTTTTGATTCTGCTCTGGAGCATACTGGGAATCAAAGTTTTGACTACTACACTAAAAATGACAGCAGTGAGGGGTTCAAGGGTCCCTATGACTTAACTATCGAAGTTGATGAAATAGATCTACCAAATGGACTCGACACCTATGAACCACCGGATGTTAGAGGACTCGACCAAGAATGCCAAGATCCAGAGATTGCAGCAGATGGAGAGGATGCTACTGATGATGAGCTCTTAAAATACATTCAAGAGGATGAATATGAAGTATTTGACCTTAGAATTATACATAGAAAGAACAGGACTGGATTTGAAGAAAGCAAGGAACTGCCCATTGTGCTAAATACAGTCTTGGCTGGCAGGTACTATGTAACAGAATATCTTGGTTCAGCTGCCTTTAGTAGGGTTGTTCAGGCACATGATCTTCAGAAAGGAGTAGACGTTTGCTTGAAGATTATTAAAAATGACAAAGACTTCTTTGATCAAAGCTTAGATGAAATCAAGCTCCTGAAACTTGTCAATAAGCATGACCCAGCAGATAAACACCACATCTTGCGTCTTTATGACTATTTCTACCATCAGGAGCATTTATTCATTGTGACTGAACTTCTGCGAGCAAACTTGTATGAGTTTCAGAAATTCAATCAAGAATCTGGAGGGGAAGCATATTTTACATTGAACAGATTGCAGCTCATTACTCGTCAGTGTTTGGAGGCACTGCAATTCTTGCATAACTTGGGAATTGTTCATTGCGACCTGAAGCCAGAAAACATTCTAATCAAAAGTTACAAAAGGTGTGAGATAAAGGTTATTGATCTTGGAAGCAGTTGTTTTCTAACAGACAATCTGTGTCTATATGTACAATCCCGATCCTATAGAGCTCCTGAAGTGATGTTAGGCCTTCAATATGACGAAAAGATTGATATATGGTCTCTCGGCTGTATTTTGGCAGAGCTCTGCTCTGGTGAAGTGCTCTTTACAAATGATGCAGTTGTGATGATTCTAGCACGCATAATTGGAATGTTTGGTCCTATTGATCTGGAGATGTTGGTGAAAGGGCAGGAAACACACAAGTACTTCACCAAAGAATATGATATTTATTATGTGAATGAGGTTTGTTTCCCTTTTTTATCTGTCATAGATGTTCCTTCTTTACCAGAAGGTCAACATATTTAA 2052 0.4089 MAMAVSNGVEAVFEFLRKNGLSEAESALREDIIEKSDDLASFDYEKFFFPMVPPPPPVRVRSFSRPSELPVTGECSKSSSASSEDQFVSIGSPASRVSSLEFINPYGIRSSSQTQNDSDSSSDRLSQFGTARDYHDFDMQNEPYWYNEKDDDYFMTPSFEGPDFFGCQSEDKFVMTAEMENQQHNSLDLDYNYEELQLEGNDGYMDKACLFNPSSVGDEKVTYSKGCCHVDNKDQFDVELEGKAEKHTDTVAYSCEVPLCKSCPGSGGDSCSGDPNLKEIHLNDFELKVVRDINSFDSALEHTGNQSFDYYTKNDSSEGFKGPYDLTIEVDEIDLPNGLDTYEPPDVRGLDQECQDPEIAADGEDATDDELLKYIQEDEYEVFDLRIIHRKNRTGFEESKELPIVLNTVLAGRYYVTEYLGSAAFSRVVQAHDLQKGVDVCLKIIKNDKDFFDQSLDEIKLLKLVNKHDPADKHHILRLYDYFYHQEHLFIVTELLRANLYEFQKFNQESGGEAYFTLNRLQLITRQCLEALQFLHNLGIVHCDLKPENILIKSYKRCEIKVIDLGSSCFLTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFTNDAVVMILARIIGMFGPIDLEMLVKGQETHKYFTKEYDIYYVNEVCFPFLSVIDVPSLPEGQHI. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00903 683 ProSiteProfiles Protein kinase domain profile. 414 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00903 683 PANTHER DUAL SPECIFICITY PROTEIN KINASE 113 653 - -
Seca8g00903 683 CDD PKc_DYRK_like 414 654 - -
Seca8g00903 683 Gene3D Phosphorylase Kinase; domain 1 409 495 - -
Seca8g00903 683 SMART serkin_6 414 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00903 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Seca8g00903 683 FunFam Putative serine/threonine-protein kinase dyrk2 408 495 - -
Seca8g00903 683 Gene3D Transferase(Phosphotransferase) domain 1 468 662 - -
Seca8g00903 683 Pfam Protein kinase domain 416 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00903 683 SUPERFAMILY Protein kinase-like (PK-like) 403 664 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00903 Seca-Chr8 12030651 12035318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00903 411 653 MAP Kinase Gene Family AT5G19010 31.939 5.87e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Seca8g00903 Pkinase 3.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00903 - - gmx:100783988 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00903 8 12030651 12035318 Seca8g00903 8 12030651 12035318 ECH