Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00893 ATGTGCAGTGGTTCAAAAAGTAAACTTTCTTCCTCAGACCACGTCATGGAGAGTAACCTTCAGAAGGAGAATTATGATGGTCTCAATAGCTTCTCAATTTTGCTTGAATTGTCTGCATCTGATGATTTTGAAGCTTTCAAAAGAGAAGTAGATGACAAGGGTTTGGATATCAACGAGGTTGGCTTTTGGTATGGTAGAAGAATTGGATCAAAGAAGATGGGATCTGAAAAGAGGACCCCCCTCATGATTGCTTCTTTGTTTGGAAGCACCAGGGTGCTCAAGTATATCCTTCAGACAGGAAGGGTTGATGTGAACAGGGTTTGTGGTTCTGATAAGGCCACTGCTCTCCATTTTGCTGTTGCTGGGGGTTCTGAATTCTCCCTTGAGATTGTCAAGCTCTTGCTTGATGCTGGAGCAGATGCTGATTACCTTGATGCTTGTGGGAATAAGCCTGTTAATCTGATTGCTCCTGCCTTCAATTCTTCCGCCAAATCGCGAAGGAAGGCCATGGAGTTGCTTCTCAGAGGTGAGGAAAGTGATCAACTCATCCACCAGGAGATGGAGCAAGAGATGTTCTCTCTTCCAAAAGAAGGCACAGAGAAAAAAGAAGGAAGTGATAAGAAAGAATATCCTATTGATATATCGTTGCCTGACATTAACAACGGTATATATGGAACAGATGAGTTTAGGATGTATAGTTTCAAGGTGAAGCCATGCTCAAGGGCTTACTCCCATGATTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCATGCCCAGAATTTCGCAAAGGTTCCTGCCAGAAAGGTGATTCCTGTGAGTATGCTCATGGTGTTTTTGAGTCCTGGCTACATCCTGCACAATACCGAACAAGGCTTTGCAAGGATGAGACTGGCTGCACTAGAAAAGTCTGCTTCTTTGCTCACAAACCGGAAGAGCTTCGACCCGTGTATGCTTCCACTGGGTCAGCTATGCCTTCACCAAAATCTTATTCATCTAGTGCACTTGACATGACAGCAATGAGTCCATTGGCTCTTAGTTCCTCATCTTTGCCTATGCCAACTGTTTCAACACCACCAATGTCTCCCTTGGCAGCTTCATCATCTCCCAAGAGTGGAAATTTGTGGCAGAACAAAATAAACCTTACTCCACCATCATTGCAGCTCCCAGGTAGCCGGTTGAAGGCTGCTTTGAGTGCTAGGGATCTGGACCTGGAGATGGAACTGCTTGGTCTAGATAGTCCTGCTAGACAACAGCAACAACAACAACAATTGATAGAAGAGATTGCCAGGATCTCTTCTCCATCATTCCGGAGCAAGGAGTTCAATAGGATTGGTGAATTAACCCCAACTAACCTTGATGAACTGTTAGGATCAGCTGATCCTTCTGTATTATCTCAACTACATGGACTTTCTGTGCAACCTTCAACACCTACACAGTTGCAATCACAAACTGGTCTTCAAATGCGCCAAAACATGAACCACCTTCGCGCAAGCTATCCATCCAATAACATTCCTTCCTCACCTGTGAGGAAATCATCACCATTTGGGTTTGACACATCAGCTGCCGTGGCAGCTGCAGTGATGAATTCCAGGTCTGCTGCTTTCGCGAAGCGAAGCCAAAGCTTCATTGATCGCGGGGCTGCAACACATCATCTTGGGCTGTCTTCACCTTCCAACCCTTCCTGTAGGGTGTCCTCTGGCCTTTCAGATTGGAGTTCTCCAACTGGGAAACTGGATTGGGGTGTAAATGGAGATGAGCTGAACAAGCTGAGGAGATCTGCTTCTTTTGGGTTCAGAAATAATGGGGTAGCTGCAACTGCATCCTCTATAGCACAATCAGAACATGCTGAGCCTGATGTCTCATGGGTTCATTCATTGGTCAAAGATGTTCCTTCTGAGAATTCTGATATGTTTGGTGCTGAGAAGCAGCAGCAGCAGCAATATGATCTCAGTAAAGAGATGCTTTCACCATGGGTGGAGCAGCTGTATATAGAGCAGGAGCAGATGGTAGCATGA 2064 0.4549 MCSGSKSKLSSSDHVMESNLQKENYDGLNSFSILLELSASDDFEAFKREVDDKGLDINEVGFWYGRRIGSKKMGSEKRTPLMIASLFGSTRVLKYILQTGRVDVNRVCGSDKATALHFAVAGGSEFSLEIVKLLLDAGADADYLDACGNKPVNLIAPAFNSSAKSRRKAMELLLRGEESDQLIHQEMEQEMFSLPKEGTEKKEGSDKKEYPIDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSSALDMTAMSPLALSSSSLPMPTVSTPPMSPLAASSSPKSGNLWQNKINLTPPSLQLPGSRLKAALSARDLDLEMELLGLDSPARQQQQQQQLIEEIARISSPSFRSKEFNRIGELTPTNLDELLGSADPSVLSQLHGLSVQPSTPTQLQSQTGLQMRQNMNHLRASYPSNNIPSSPVRKSSPFGFDTSAAVAAAVMNSRSAAFAKRSQSFIDRGAATHHLGLSSPSNPSCRVSSGLSDWSSPTGKLDWGVNGDELNKLRRSASFGFRNNGVAATASSIAQSEHAEPDVSWVHSLVKDVPSENSDMFGAEKQQQQQYDLSKEMLSPWVEQLYIEQEQMVA. 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00893 687 ProSiteProfiles Zinc finger C3H1-type profile. 268 295 IPR000571 GO:0046872
Seca8g00893 687 SMART ANK_2a 76 106 IPR002110 GO:0005515
Seca8g00893 687 SMART ANK_2a 111 143 IPR002110 GO:0005515
Seca8g00893 687 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Seca8g00893 687 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Seca8g00893 687 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Seca8g00893 687 Gene3D - 4 221 IPR036770 -
Seca8g00893 687 SUPERFAMILY Ankyrin repeat 27 165 IPR036770 -
Seca8g00893 687 PANTHER UNKEMPT FAMILY MEMBER 36 646 IPR045234 -
Seca8g00893 687 Pfam Ankyrin repeats (3 copies) 72 142 IPR002110 GO:0005515
Seca8g00893 687 Gene3D - 270 331 - -
Seca8g00893 687 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Seca8g00893 687 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
Seca8g00893 687 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00893 Seca-Chr8 11858146 11861076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00893 29 682 C2H2 Transcription Factor Family AT5G12850 40.559 7.56e-146 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g00893 Ank_2 4.2e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00893 - - gmx:100783376 1048.88