Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00882 ATGGAAAATTACTACTATTCTGGTTGGCCTCTGGCCACTAATTGGACTCAGTGCAACTCTGCACCAAACAGTGATGAGTCACCCTTTTCAGTCCCAACACAGTTACTTCCTCTTGCCACTGACTCTGCCTCTCTTCATTTTGGTGAATTCCCTTCATGGCCTGTTGCTGTGCCCGTTGAAAATAGAGCTGCAAGTGCTTCCAAGAGCCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGAATCAATGCACAGCTTGCAACTCTCAGAAAACTGATTCCCAAGTCTGATAAGCAGATGGACAAGGCAGCATTACTAGGGAGTGTTGTAGACCATGTGAAGGATCTAAAGAGAAAAGCCTTGGATGTCAGCAAAGTCAATACTGTTCCAACTGAAATTGATGAAGTAACAATTGACTATCACTCAGCTCAAGATGAAAGTAACTATAATAATAGAAACATTGTGAAGGAAAATGTCATCATCAAAGCTTCTGTTTGCTGTGATGATCGACCAGAACTGTTCCCTGAGATCATTCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTCAAAGCTGACATAACCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTGCTTTGCTCAAAGAACAGTGAAGAGGGTGGTGGTGTTTGTCTTAGCACTGTTAAACAATCCCTTAAATCAGCTGTGAACAAAATTGCTTCTCTATCTGTGGCATCAAATTGTCCCACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTTCGTACAATAA 777 0.4299 MENYYYSGWPLATNWTQCNSAPNSDESPFSVPTQLLPLATDSASLHFGEFPSWPVAVPVENRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKQMDKAALLGSVVDHVKDLKRKALDVSKVNTVPTEIDEVTIDYHSAQDESNYNNRNIVKENVIIKASVCCDDRPELFPEIIQVLKGLRLTAVKADITSVGGRIKSILVLCSKNSEEGGGVCLSTVKQSLKSAVNKIASLSVASNCPTRSKRQRFFLPSHFVQ. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00882 258 Pfam Helix-loop-helix DNA-binding domain 68 115 IPR011598 GO:0046983
Seca8g00882 258 SMART finulus 71 121 IPR011598 GO:0046983
Seca8g00882 258 CDD bHLH_AtAIG1_like 60 138 - -
Seca8g00882 258 CDD ACT_UUR-ACR-like 163 198 - -
Seca8g00882 258 Gene3D - 60 123 IPR036638 GO:0046983
Seca8g00882 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 119 IPR036638 GO:0046983
Seca8g00882 258 PANTHER TRANSCRIPTION FACTOR BHLH30 57 253 IPR045847 GO:0003700|GO:0006355
Seca8g00882 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 115 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00882 Seca-Chr8 11709198 11711165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00882 1 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.697 1.41e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g00882 HLH 9.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00882 - - gmx:100306102 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00882 8 11709198 11711165 Seca8g00882 8 11709198 11711165 ECH
Seca8g00882 8 11709198 11711165 Seca6g02073 6 80383364 80385246 PCT