Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00881 ATGATTGTAGGAAACTCAAATTCCAATAGTGATGGTGGAGACGTTGATCGCGTGAAAGGTTCATGGACTCCTCAAGAAGACGCAACGCTCTTGAAGCTGGTGAGACAACACGGTCCTCGGAATTGGTCCATCATCAGCGCCGGAATTCCTGGCCGTTCTGGTAAGTCTTGCCGTCTCCGGTGGTGCAATCAGCTGAGTCCCGACGTTCAGCACCGTCCGTTTTCCCCTGCGGAGGACAGGATCATCATCAAAGCACACGCGATTCACGGAAACAAATGGGCGACAATTTCACGCCTCCTTCCTGGACGCACCGATAATGCTATCAAGAATCACTGGAACTCCACGCTCCGCCGTCGTATGGCGGAGCAATCACCACCACCACCACAACCACCACCTCTTCCTCCTCGAGTCTCTCCACCTCCTATGACAATGCTGAAGCGTCCTCCAGGTCCCTATGATGCACTCCTCCTTGACGCTTACGACGGTTTGGTGGATCTAAGACAGTGCCCTTTCAAACGGACATGTACGGGGAACAGCAGCAGTTTTCGCTACGGTGAGGATAACACGACGGAGGATCCTGTGACGACGTCGTTGAGCCTGTTGCCGCCTGGAGAGAGCATAGAGAAGATGGAGGAGGAAGAAGAAGAGGAAAAAGAAGATAAAAGAATGGAACAATTTGAAATGAATGTGATTGTGAATAAGGCGAGGCATGAAGAATTGTTGAAGACACTACAGCGCATGGTAGCAGAGGAGGTTAGGAGTTATGTTGAGAGCTTGCGGATACGTGACAGGGATGGGCTCGAACTTGGAACTGGTTTAGCTCCTACTAATTCAACAATTCCAAAATAA 849 0.5053 MIVGNSNSNSDGGDVDRVKGSWTPQEDATLLKLVRQHGPRNWSIISAGIPGRSGKSCRLRWCNQLSPDVQHRPFSPAEDRIIIKAHAIHGNKWATISRLLPGRTDNAIKNHWNSTLRRRMAEQSPPPPQPPPLPPRVSPPPMTMLKRPPGPYDALLLDAYDGLVDLRQCPFKRTCTGNSSSFRYGEDNTTEDPVTTSLSLLPPGESIEKMEEEEEEEKEDKRMEQFEMNVIVNKARHEELLKTLQRMVAEEVRSYVESLRIRDRDGLELGTGLAPTNSTIPK. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00881 282 CDD SANT 73 116 IPR001005 -
Seca8g00881 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 69 IPR017930 -
Seca8g00881 282 Gene3D - 73 120 - -
Seca8g00881 282 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
Seca8g00881 282 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Seca8g00881 282 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Seca8g00881 282 Gene3D - 18 70 - -
Seca8g00881 282 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Seca8g00881 282 Coils Coil 207 229 - -
Seca8g00881 282 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g00881 282 FunFam Transcription factor MYB44 73 119 - -
Seca8g00881 282 SMART sant 70 118 IPR001005 -
Seca8g00881 282 SMART sant 18 67 IPR001005 -
Seca8g00881 282 MobiDBLite consensus disorder prediction 123 146 - -
Seca8g00881 282 CDD SANT 21 63 IPR001005 -
Seca8g00881 282 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Seca8g00881 282 FunFam MYB transcription factor 19 70 - -
Seca8g00881 282 MobiDBLite consensus disorder prediction 118 146 - -
Seca8g00881 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Seca8g00881 282 PANTHER MYB PROTEIN-RELATED 19 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00881 Seca-Chr8 11702457 11703305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00881 14 121 MYB Transcription Factor Family AT4G37260 71.296 1.41e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g00881 Myb_DNA-binding 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00881 - - cam:101514420 298.901