Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00880 ATGTCGAACCACGACGCTCAAGCTTTCAATTGGCACTACAACACAGAACTTGACGAGGAAAACTTTGTAATCCGTGGCCGGAAACTCTTCTTCATCATCGTCCTCTTCGCCATTATCCTCATCTTCACCGCTCTGTTCATCTGCGCCCGCTGGATCTGCCGCCGCCACCGCGACCTTCTCCCGACGGCGTTCCACGCGCCGGTTTTGGCTTCTTCGACGGCGTTGTCGCAGGGACTCGACGCCGACACGATCAAGAAGCTACCGATTATTCTGCATCAGGCATCGCCGTCTTGTGGTCCGAATCAGGAAAGAGAGTGCTGCATCTGCTTGAGCGCGTTCAGAGATGGCGAGAAGTTGAAGGTTCTTCCTGGATGTGACCACTGTTTCCATTGCGAGTGCGTTGATGAGTGGCTTGCGAATCACTCAAGTTGCCCTCTCTGTAGAGCTTCTCTCAAGCTCGATTCCTCGTTCCCTGAGATTTTGATCCAAGAACCACCGATTAGATATAATCTCAGATTCTGA 522 0.523 MSNHDAQAFNWHYNTELDEENFVIRGRKLFFIIVLFAIILIFTALFICARWICRRHRDLLPTAFHAPVLASSTALSQGLDADTIKKLPIILHQASPSCGPNQERECCICLSAFRDGEKLKVLPGCDHCFHCECVDEWLANHSSCPLCRASLKLDSSFPEILIQEPPIRYNLRF. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00880 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 155 - -
Seca8g00880 173 FunFam RING-H2 finger protein ATL66 71 153 - -
Seca8g00880 173 CDD RING-H2_EL5-like 105 148 - -
Seca8g00880 173 SMART ring_2 106 147 IPR001841 -
Seca8g00880 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 153 IPR013083 -
Seca8g00880 173 SUPERFAMILY RING/U-box 101 154 - -
Seca8g00880 173 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Seca8g00880 173 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00880 Seca-Chr8 11673237 11673758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00880 11 156 C3H Transcription Factor Family AT3G11110 44.000 2.45e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00880 - - gmx:100794554 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00880 8 11673237 11673758 Seca6g02071 6 80337566 80338090 PCT