Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00878 ATGGACAACAACTACTCACCTCCTCAACCCCAAGAAACCAAACCCACCGTCACCACCGTTCCAACCTCCACTCCCAGTGAAACATCTAACAGTACCAACAGTAGCAGCAGTTGCAGCATCACCAACAACCGTAAATGCAAAGGCAAAGGTGGCCCTGACAATAACAAATTTAGATACCGTGGTGTGAGGCAACGAAGCTGGGGTAAATGGGTTGCTGAGATCCGAGAGCCACGTAAGCGTACTCGCAAGTGGCTCGGTACCTTCTCAACCGCTGAAGATGCAGCACGAGCCTATGACCGTGCCGCGATTATTCTCTACGGTTCTAGGGCTCAACTTAACCTCCAACCCTCCGGTTCCTCTTCTCAATCTTCCTCCTCTTCTCGTAACTCCTCGTCTTCCTCCTCAACTCAAACCCTTCGTCCTTTACTTCCTCGCCCTTCAGGATTCGGTTTCACCTTCTCCTCCGGTTCTCATCTTTTCAACACCGTAACCGCCACTTCGGGATTCGTGCCGATTGGGGTTTATAATAACGGCTTCATCCCACAGGTGATGTATCCCGTTGATAATAACAACTTCCATCGCTCTCACGAAGTGGTGCAACAACATCATCGAGAATCTGATTCTGGTAGTGGTGCGGTTATTCCTCATCATCATAATCATCATGCAAGTGGTGCTTCTGTTAGATCAACAACCTCGTACCACAACCATACTCATCAGGATCAGCATGGACATGGACAACAAAATTATGCCATGTCGAATCATCATCATCATCAATTGCAGCAGCAGCTTGAGAATTGTGTGGGGGAGGGAATGAATTCGTTGGTGGGGACAAGTTTGTCTAATTCTGATCAGAATATTAATTTGGAAGATGCAGCGGTGGTGGATCCGGATCCAACGACGTCGTTGGGGGTTGTAGGGACAGTGGGTCTTGGTTCTCCGTCTATTTGGCCTTTGACGAATGAGGAGGATTACCCTGCTTGCCTCTGGGATTATAATGATCCTTTCTTCTTTGATTTTTAA 1020 0.4794 MDNNYSPPQPQETKPTVTTVPTSTPSETSNSTNSSSSCSITNNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQPSGSSSQSSSSSRNSSSSSSTQTLRPLLPRPSGFGFTFSSGSHLFNTVTATSGFVPIGVYNNGFIPQVMYPVDNNNFHRSHEVVQQHHRESDSGSGAVIPHHHNHHASGASVRSTTSYHNHTHQDQHGHGQQNYAMSNHHHHQLQQQLENCVGEGMNSLVGTSLSNSDQNINLEDAAVVDPDPTTSLGVVGTVGLGSPSIWPLTNEEDYPACLWDYNDPFFFDF. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00878 339 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Seca8g00878 339 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Seca8g00878 339 FunFam Ethylene-responsive transcription factor 2 58 116 - -
Seca8g00878 339 MobiDBLite consensus disorder prediction 1 44 - -
Seca8g00878 339 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Seca8g00878 339 MobiDBLite consensus disorder prediction 206 260 - -
Seca8g00878 339 MobiDBLite consensus disorder prediction 114 143 - -
Seca8g00878 339 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Seca8g00878 339 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677
Seca8g00878 339 MobiDBLite consensus disorder prediction 242 260 - -
Seca8g00878 339 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 32 285 - -
Seca8g00878 339 Pfam AP2 domain 58 106 IPR001471 GO:0003700|GO:0006355
Seca8g00878 339 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Seca8g00878 339 MobiDBLite consensus disorder prediction 114 142 - -
Seca8g00878 339 MobiDBLite consensus disorder prediction 1 60 - -
Seca8g00878 339 CDD AP2 58 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00878 Seca-Chr8 11640347 11641366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00878 44 339 AP2-EREBP Transcription Factor Family AT2G40220 44.268 4.00e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g00878 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00878 K09286 - gmx:100301892 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00878 8 11640347 11641366 Seca8g00878 8 11640347 11641366 ECH