Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00877 ATGGGAAGTTCCGTGCGTGTGAAAGAAGCACTTGTGGTCACTCCTTCCGAACCCACCCCATCCCTTGTCCTACCACTATCAGCACTTGATTCGCAACTCTTCCTTCGTTTCACCATAGAGTACCTATTCGTCTACGAGCCTAGCCCCGGCGTGGACCAGGGTTCCACCACGGCTCGTCTTAAAGCAGCATTAGCCAAAGCCCTGGTTCCTTATTACCCTTTCGCTGGGAGGGTCAGAACCAGACCCGATGGTTCGTTTCTTGAGGTGGTGTGTGGGGCCCAGGGTGCGGTGTTTATCGAGGCCTTCACTGACCGTTACAGTTCCAACGACTTCGAGAAACCGCCCAAAACGGTTACACACTGGAGGAAATTCTTATCCCTCCACGTGGCAGACGTTCTCAAGGGATCGCCTCCGCTGGTTGTTCAGCTGACGTGGCTCTCCGACGGAGCCGCTGCAATCGGCGTCGGGATCAACCACTGCATCTGCGACGGAATCGGGAGCGCTGAGTTTCTAAACTATTTCGCCGAGTTAGCTTCCGGAAAACTCAGCGAGTTCGGTTCTAGAGAATCTAGACCTAGACCCGAACCTGTTTGGGACCGTCACCTAATGAACTCGAAGCGTGTTAGGGTTAACCCGGTGAGTCACCCCGAGTTCAACCGAGTCCCTGACCTCTGCGGGTTCATGAACCGAGTCACCAGCGGGCTTAAACCAACCTCCATTACCTTCGACAAGAGGCGACTCAGCGAGCTGAAGAGACTCGCTCGGTGCACGAGTCAACCGGGCGAGTCGTTGTTCTACACGTCGTTCGAGGTGCTCGCGGCTCATGTATGGAGGAGCTGGGCAAGAGCACTGAATTTTCCGCCGAATCAAATGTTGAAGCTGTTGTTCAGCGTCAACGTGCGGAACCGAGTCAAACCGGGTTTACCCGAGGGGTACTACGGGAACGCGTTTGTGTTGGGTTGCGCGGAGACGAGTGCGAAGGAGTTGGAGGAGAGGGGGATCGGGTACGGGTCGGGTTTGGTGAAGAAAGCGAAGGAGAGAGTGGGGAACGAGCACGTGAGAGAGGTGATTGAGTTGGTGTCGGAGCGTAGAGCGAGTCCTGACTCGGTTGGAGTGTTGATAGTGTCACAGTGGTCAAGATTGGGTTTGGAGAGGGTTGACGTGGGAATGGGAAAGCCGGTTCATGTAGGACCCGTATGCTGCGATCGGTACTGTTTATTTTTGCCGGTGAGGGAGGAGAATGTGAATGCGAGTGTGAAGGTGATGGTTGCTGTCCCTACACCTGCCGTTGACAATTACGAGATTTTGATGCGAGCGTTGCATCTGTGA 1329 0.5478 MGSSVRVKEALVVTPSEPTPSLVLPLSALDSQLFLRFTIEYLFVYEPSPGVDQGSTTARLKAALAKALVPYYPFAGRVRTRPDGSFLEVVCGAQGAVFIEAFTDRYSSNDFEKPPKTVTHWRKFLSLHVADVLKGSPPLVVQLTWLSDGAAAIGVGINHCICDGIGSAEFLNYFAELASGKLSEFGSRESRPRPEPVWDRHLMNSKRVRVNPVSHPEFNRVPDLCGFMNRVTSGLKPTSITFDKRRLSELKRLARCTSQPGESLFYTSFEVLAAHVWRSWARALNFPPNQMLKLLFSVNVRNRVKPGLPEGYYGNAFVLGCAETSAKELEERGIGYGSGLVKKAKERVGNEHVREVIELVSERRASPDSVGVLIVSQWSRLGLERVDVGMGKPVHVGPVCCDRYCLFLPVREENVNASVKVMVAVPTPAVDNYEILMRALHL. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00877 442 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 13 426 - -
Seca8g00877 442 Gene3D - 2 220 IPR023213 -
Seca8g00877 442 Gene3D - 231 437 IPR023213 -
Seca8g00877 442 Pfam Transferase family 4 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00877 Seca-Chr8 11591001 11592329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00877 5 437 Monolignol Biosynthesis Gene Families AT5G48930 25.850 3.05e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00877 - - gmx:100817048 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00877 8 11591001 11592329 Seca6g02068 6 80181912 80183219 PCT