Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00874 ATGAAGGGTTATGAACCCCGGTCAAGCTCTTCTTGTGCAGCCTGCAAGTTCTTGAAAAGAAGATGCATACCCAATTGTATATTTGCACCTTACTTTCGCTCTGATGAGTGCAAGAAATTTGCCAAGGTTCACAAGGTGTTTGGAGCCAGCAATGTGAGCAAGATCCTCATTGAAGTGCCAGAGGAGCAGAGGGAGGACACTGTGAATTCACTGGCTTATGAGGCTGAGGCAAGGCTTAGAGACCCAGTTTATGGATGCATAGGTGCCATAGCACTGTTGCAAAGGAAGATGGTGGAGCTTCAACATGACCTTGCCATTGCTAAGGATCGTCTTGCTCGTTATGCTACTGCTGCTGCTACCACCCCTTCAAGTTCCACTGATATCTCGAGTTCCAATGTTAGCTTGCCACCCTTCCCTGATTTCTTCACCTGCAGTGATTTCAATGACAGCTTCTGCCACAGCTCTTCATCTCAGTCATTGAGCAGACATGAAACGCATGGAGCACCCATTGTGACTTTCAGAGTCACGAACCCCACCAATGGTCCTTACACTTTACCGTGTCATGGGTATCCAAAGACTGATGCCAAGACCGTAAAGGTGGATCAGTTTCTTTGCCGTCTATAG 624 0.4744 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARYATAAATTPSSSTDISSSNVSLPPFPDFFTCSDFNDSFCHSSSSQSLSRHETHGAPIVTFRVTNPTNGPYTLPCHGYPKTDAKTVKVDQFLCRL. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00874 207 Coils Coil 90 110 - -
Seca8g00874 207 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Seca8g00874 207 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Seca8g00874 207 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00874 Seca-Chr8 11571164 11572551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00874 1 142 AS2 family AT3G11090 64.583 1.36e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g00874 LOB 9.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00874 - K14486 gmx:100305534 257.299