LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g00873	ATGAATGATGTTGTATCCACAATGATGATCTCTTCAGGCTTGTTACCAACTGGTTCTTTGCTAGATTCTTTGATTCACATATCCAATGAAGTTGGCTCAATGGAGAAGTTTCCCTTCATACACACAAGGAATGTTTCATCCATGATAAGGAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACAGATACCCCACTTCCTCCTTCTTCAATCCTGTGCTTCACAGAACTCTTCTCTGTGATCACAAGAGTGAAGGTTTTGATCCAAGAGTGCAAGGATGGAAGCTCTCTTTGGGGTCTAATACAGTTAGATTTCATTTCCAACCAATTCTATGTGCTTGTAAAAGAGATGGGAAGGGCCCTTGATATCTTGCCTCTGAGTTTGCTTAATATAACAGCAGATATAAGAGAGCAAGTGGAGCTTCTGCAGAAACAGACAAAAAGGGCTGAGTTACTCATTGATCCTAGAGAGCTTCAAAGAAGAGAAAAGCTTCTACAAGTAATGGCCAACAACAGTTTACAAAACAAGAAGAACAAAGGGTTCATTGATTTTGGGAAAGTTGAAGAGATATTAAGCAGCATTGGTTTGAAAACCCCATCAGATTATGATGGAGAAATATCCAAGTTAGAGGCTGAAGCTCAGAATCAAGCAGGTACTGGGGGACTAATTGTTGTGTCCAATATAAACAATCTCATATCTTTGGTTTCATATTCCAAATCCATGATATTCAGAAATGGAGAAAATAATAGAGATGAAGAAGACTGCAAGCCACTATCTATATTTTTATCATGTAACAAAATCCATGATAGTTCTTCATCTTCTCAGTCCATGTCCTTGACACCTAATATTCCTGATGAATTTCGTTGCCCAATTTCACTTGACTTAATGAGGGACCCTGTGATTGTATCATCAGGTCACACTTATGATAGAAATTCAATTGCACAGTGGATAAACTCAGGGCATCACACTTGCCCCAAAAGTGGTCAAAGGCTAATTCACACTGCTCTAATACCAAACTATGCATTAAAAAGCCTTGTTCAGCAATGGTGCTATGAAAACAATGTCCCAGTGAATGAGCCTACAACTTCCCTTTCAGAGGGAAACAACAACAGCAAGAAGAACATGAATGACAAGGCCATTGATCATATTTCTGCAAACAAAGCAGCTTCAGATGCTGTCAAAATGACAGCAGAATTCCTAGTTGGAAAATTGGCAACTGGTTCAGCTGATATCCAAAGACAAGCTGCATATGAACTTAGGTTACTTGCAAAAACAGGCATGGATAATAGAAGAGTCATAGCTGAGGTAGGGGCTATTCCATTTCTTGTAACACTCCTAGGATCACAAGATTCAAGAATCCAGGAACATGCAGTGACAGCTTTGTTCAACCTCTCTATCTATGACAACAACAAGATTTTGATCATGTCAGCTGGAGCAGTTGATAACATAGTACAAGTACTTGAATCAGGGAAAACAATGGAAGCAAGAGAGAATGCTGCAGCAACAATATTTAGCTTGTCTATGGTAGATGATTGTAAAGTACAAATTGGAGCAAGTCCAAGGGCAATACAAGCATTAGTTGGACTTCTTAAAGAAGGCACCCCAATAGGGAAAAGGGATGCTGCAACTGCATTATTCAATCTTGCAGTTTACAATCCAAACAAAGCAAGCATTGTTAAAGCTGGGGCAGTTCCTTTGTTGGTTGAGTTGTTGATGGATGATAAGGCTGGCATAACAGATGATGCACTAGCTGTGCTTGCTGTGCTTCTAGGTTGTTCTCAAGGACTAGAAGAGATAAGGAATAGTAGAGCATTGGTGCCACTTCTTATTGATCTTTTGAGATTTGGGTCAGTGAAAGGGAAGGAAAATTCAATAACACTTTTACTAGGATTGTGCAAAGAAGAAGGGGAACTTGTGGCAAGGCGTCTATTGGCAAATCCAAGGAGTGTTCCTTCTCTTCAGAGTTTGGCTGCTGATGGTTCTTTGAGAGCTAGAAGAAAAGCAGATGCATTGCTTCGGTTACTCAATAGATGTTGCTCTCAACCTCATCATTCTGTGTGA	2070	0.3966	MNDVVSTMMISSGLLPTGSLLDSLIHISNEVGSMEKFPFIHTRNVSSMIRRIKLLSSLFEEIQETDTPLPPSSILCFTELFSVITRVKVLIQECKDGSSLWGLIQLDFISNQFYVLVKEMGRALDILPLSLLNITADIREQVELLQKQTKRAELLIDPRELQRREKLLQVMANNSLQNKKNKGFIDFGKVEEILSSIGLKTPSDYDGEISKLEAEAQNQAGTGGLIVVSNINNLISLVSYSKSMIFRNGENNRDEEDCKPLSIFLSCNKIHDSSSSSQSMSLTPNIPDEFRCPISLDLMRDPVIVSSGHTYDRNSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYENNVPVNEPTTSLSEGNNNSKKNMNDKAIDHISANKAASDAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMDNRRVIAEVGAIPFLVTLLGSQDSRIQEHAVTALFNLSIYDNNKILIMSAGAVDNIVQVLESGKTMEARENAAATIFSLSMVDDCKVQIGASPRAIQALVGLLKEGTPIGKRDAATALFNLAVYNPNKASIVKAGAVPLLVELLMDDKAGITDDALAVLAVLLGCSQGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGELVARRLLANPRSVPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSV.	690

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g00873	689	FunFam	RING-type E3 ubiquitin transferase	384	684	-	-
	Seca8g00873	689	SUPERFAMILY	ARM repeat	400	678	IPR016024	-
	Seca8g00873	689	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	524	566	IPR000225	GO:0005515
	Seca8g00873	689	SMART	Ubox_2	289	352	IPR003613	GO:0004842\|GO:0016567
	Seca8g00873	689	FunFam	RING-type E3 ubiquitin transferase	285	359	-	-
	Seca8g00873	689	Gene3D	-	541	685	IPR011989	-
	Seca8g00873	689	PANTHER	U BOX DOMAIN-CONTAINING	43	683	-	-
	Seca8g00873	689	Gene3D	-	371	538	IPR011989	-
	Seca8g00873	689	CDD	RING-Ubox_PUB	287	339	IPR045210	-
	Seca8g00873	689	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	285	361	IPR013083	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g00873	Seca-Chr8	11552235	11554304	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g00873	18	684	U-box Gene Family	AT3G46510	38.039	1.37e-132	404

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g00873	-		-	gmx:100793498	1134.78

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