Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00873 ATGAATGATGTTGTATCCACAATGATGATCTCTTCAGGCTTGTTACCAACTGGTTCTTTGCTAGATTCTTTGATTCACATATCCAATGAAGTTGGCTCAATGGAGAAGTTTCCCTTCATACACACAAGGAATGTTTCATCCATGATAAGGAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACAGATACCCCACTTCCTCCTTCTTCAATCCTGTGCTTCACAGAACTCTTCTCTGTGATCACAAGAGTGAAGGTTTTGATCCAAGAGTGCAAGGATGGAAGCTCTCTTTGGGGTCTAATACAGTTAGATTTCATTTCCAACCAATTCTATGTGCTTGTAAAAGAGATGGGAAGGGCCCTTGATATCTTGCCTCTGAGTTTGCTTAATATAACAGCAGATATAAGAGAGCAAGTGGAGCTTCTGCAGAAACAGACAAAAAGGGCTGAGTTACTCATTGATCCTAGAGAGCTTCAAAGAAGAGAAAAGCTTCTACAAGTAATGGCCAACAACAGTTTACAAAACAAGAAGAACAAAGGGTTCATTGATTTTGGGAAAGTTGAAGAGATATTAAGCAGCATTGGTTTGAAAACCCCATCAGATTATGATGGAGAAATATCCAAGTTAGAGGCTGAAGCTCAGAATCAAGCAGGTACTGGGGGACTAATTGTTGTGTCCAATATAAACAATCTCATATCTTTGGTTTCATATTCCAAATCCATGATATTCAGAAATGGAGAAAATAATAGAGATGAAGAAGACTGCAAGCCACTATCTATATTTTTATCATGTAACAAAATCCATGATAGTTCTTCATCTTCTCAGTCCATGTCCTTGACACCTAATATTCCTGATGAATTTCGTTGCCCAATTTCACTTGACTTAATGAGGGACCCTGTGATTGTATCATCAGGTCACACTTATGATAGAAATTCAATTGCACAGTGGATAAACTCAGGGCATCACACTTGCCCCAAAAGTGGTCAAAGGCTAATTCACACTGCTCTAATACCAAACTATGCATTAAAAAGCCTTGTTCAGCAATGGTGCTATGAAAACAATGTCCCAGTGAATGAGCCTACAACTTCCCTTTCAGAGGGAAACAACAACAGCAAGAAGAACATGAATGACAAGGCCATTGATCATATTTCTGCAAACAAAGCAGCTTCAGATGCTGTCAAAATGACAGCAGAATTCCTAGTTGGAAAATTGGCAACTGGTTCAGCTGATATCCAAAGACAAGCTGCATATGAACTTAGGTTACTTGCAAAAACAGGCATGGATAATAGAAGAGTCATAGCTGAGGTAGGGGCTATTCCATTTCTTGTAACACTCCTAGGATCACAAGATTCAAGAATCCAGGAACATGCAGTGACAGCTTTGTTCAACCTCTCTATCTATGACAACAACAAGATTTTGATCATGTCAGCTGGAGCAGTTGATAACATAGTACAAGTACTTGAATCAGGGAAAACAATGGAAGCAAGAGAGAATGCTGCAGCAACAATATTTAGCTTGTCTATGGTAGATGATTGTAAAGTACAAATTGGAGCAAGTCCAAGGGCAATACAAGCATTAGTTGGACTTCTTAAAGAAGGCACCCCAATAGGGAAAAGGGATGCTGCAACTGCATTATTCAATCTTGCAGTTTACAATCCAAACAAAGCAAGCATTGTTAAAGCTGGGGCAGTTCCTTTGTTGGTTGAGTTGTTGATGGATGATAAGGCTGGCATAACAGATGATGCACTAGCTGTGCTTGCTGTGCTTCTAGGTTGTTCTCAAGGACTAGAAGAGATAAGGAATAGTAGAGCATTGGTGCCACTTCTTATTGATCTTTTGAGATTTGGGTCAGTGAAAGGGAAGGAAAATTCAATAACACTTTTACTAGGATTGTGCAAAGAAGAAGGGGAACTTGTGGCAAGGCGTCTATTGGCAAATCCAAGGAGTGTTCCTTCTCTTCAGAGTTTGGCTGCTGATGGTTCTTTGAGAGCTAGAAGAAAAGCAGATGCATTGCTTCGGTTACTCAATAGATGTTGCTCTCAACCTCATCATTCTGTGTGA 2070 0.3966 MNDVVSTMMISSGLLPTGSLLDSLIHISNEVGSMEKFPFIHTRNVSSMIRRIKLLSSLFEEIQETDTPLPPSSILCFTELFSVITRVKVLIQECKDGSSLWGLIQLDFISNQFYVLVKEMGRALDILPLSLLNITADIREQVELLQKQTKRAELLIDPRELQRREKLLQVMANNSLQNKKNKGFIDFGKVEEILSSIGLKTPSDYDGEISKLEAEAQNQAGTGGLIVVSNINNLISLVSYSKSMIFRNGENNRDEEDCKPLSIFLSCNKIHDSSSSSQSMSLTPNIPDEFRCPISLDLMRDPVIVSSGHTYDRNSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYENNVPVNEPTTSLSEGNNNSKKNMNDKAIDHISANKAASDAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMDNRRVIAEVGAIPFLVTLLGSQDSRIQEHAVTALFNLSIYDNNKILIMSAGAVDNIVQVLESGKTMEARENAAATIFSLSMVDDCKVQIGASPRAIQALVGLLKEGTPIGKRDAATALFNLAVYNPNKASIVKAGAVPLLVELLMDDKAGITDDALAVLAVLLGCSQGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGELVARRLLANPRSVPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSV. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00873 689 FunFam RING-type E3 ubiquitin transferase 384 684 - -
Seca8g00873 689 SUPERFAMILY ARM repeat 400 678 IPR016024 -
Seca8g00873 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 524 566 IPR000225 GO:0005515
Seca8g00873 689 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Seca8g00873 689 FunFam RING-type E3 ubiquitin transferase 285 359 - -
Seca8g00873 689 Gene3D - 541 685 IPR011989 -
Seca8g00873 689 PANTHER U BOX DOMAIN-CONTAINING 43 683 - -
Seca8g00873 689 Gene3D - 371 538 IPR011989 -
Seca8g00873 689 CDD RING-Ubox_PUB 287 339 IPR045210 -
Seca8g00873 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 361 IPR013083 -
Seca8g00873 689 Pfam U-box domain 286 356 IPR003613 GO:0004842|GO:0016567
Seca8g00873 689 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Seca8g00873 689 Pfam Armadillo/beta-catenin-like repeat 431 468 IPR000225 GO:0005515
Seca8g00873 689 Pfam Armadillo/beta-catenin-like repeat 555 590 IPR000225 GO:0005515
Seca8g00873 689 SUPERFAMILY RING/U-box 275 360 - -
Seca8g00873 689 SMART arm_5 554 594 IPR000225 GO:0005515
Seca8g00873 689 SMART arm_5 512 553 IPR000225 GO:0005515
Seca8g00873 689 SMART arm_5 595 636 IPR000225 GO:0005515
Seca8g00873 689 SMART arm_5 470 511 IPR000225 GO:0005515
Seca8g00873 689 SMART arm_5 429 469 IPR000225 GO:0005515
Seca8g00873 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 440 482 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00873 Seca-Chr8 11552235 11554304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00873 18 684 U-box Gene Family AT3G46510 38.039 1.37e-132 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00873 - - gmx:100793498 1134.78