Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00868 ATGAGCAAGAACGTGAAATTCAGTCGGCTCAGGGATCACTGTGAAGCTTTGTGCTTTTTGGCGGCGTGCTTGTTGTTTCTGAACTTGGGTTTGTGCTGTTCTTTGAATGAAGAAGGTAACGCTCTTTTGAAATTGAAGCAGAGAATAATGAGTGACCCTTTTGATGCTCTGTCAAATTGGATTGATGATGAAGCAGTTGTTGACCCGTGTAATTGGTTCGGAGTTGAGTGCTCTGATGGAAGAGTTGTGGTCTTGAATTTGAAAGATCTCTGCCTTGGAGGAACTCTAGCACCAGAGCTTGTGAACCTTATTCACATAAAGTCTATCATATTGAGGAACAACTCTTTCTCTGGGACCATCCCTGAAGGAATTGTAGATTTGAAAGAATTGGAGATTTTGGATTTGGGATACAACAACTTCAGTGGAGAAGTACCTGAAAATCTTGGGAGTAATATCTCCCTGGCAATCCTTTTGCTGGACAACAATGAGCTTCTTGTTGGTTTCTCTCCCGAAATCAATGAACTGAAGATGCTTTCTGAATGTCAAGTAGATGAAAACCAGCTAATTAATGCAGATAAGCTACCAGCTTGTAAAGAAAGATCCATGACATGGTATGTTACTAACCATTTGAAAGATGGTCTTCAGCATGTTGGTCAAAATAAAGTTACTCGGAGCCTACTGGAAAGTCATTCCAAATATCATCGTTTGCGAAAATATCCTCCTCCACATCCAGGCCCTCTTAATCGTGGGGTTAATCCACCTCTGAATAGCCCTTCTCCTTCTGGTTCCCCACCACCAGTACCAAAGTCAGCTCCATCTAGTCAAAATGATTCTCCTAATGTCATGTCTAAACCAGGTTCTGGAGCACCATCTAAGGCTCCATCTAAAAGCACCTCATCAAAGAAACATGCAATCCCTATTTTGGCTGGAGTTACAGGTGGTGCTGTATTTCTTATTTTTTCAAGCATTGGTATATATCTTTGTATAACCAACAAGGTAGCTAATGTCAGACCTTGGGCTACTGGACTAAGTGGACAGCTTCAGAAGGCATTTGTGACTGGTGCGCCAAAACTAAAGAGATCAGATCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGTAATTCACCTATTGGTACATTGTACAAAGGAACTTTGTCTAGTGGCGTTGAAATATCTGTAGCTTCTCTTCCGGTGACATCATCCAAGAATTGGTCAAAGACTTTAGAAGCTCAATTCAGGAAGAAGATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGATATTGTGAAGAAGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATACGCCCCAAATGGAACACTCTTTGAGCACTTACACATAAAAGAAGCTGAGCACTTGGATTGGGTAACAAGGCTTAGAGTTGCAATGGGCATGGCTTACTGCCTGCAACATATGCACCAGTTGGACCCTCCTTTGACTCTTACCAACTTGAATTCTTCAGCTGTCTACCTTACTGATGACTATGCAGCCAAAATCTCAGACATGAGTTTCTCTATTGAAACAGCTTCATCTGATCAGACAAAAGCTGGGGCTAGAAAAAACACTGACATGCCATTAGCAAGTCCAGAAAGTAATGTCTATAGCTTTGGTGTTTTATTATTTGAAATGGTCACTGGTCGTCTCCCTTATTCAGCAGATAATAGCTCACTTGAAAACTGGGCCTCACACTATTTACAAGCAGAGGACCAGCAACCCCTCAAAGAAATGGTGGATCCAATTCTAGCATCTTACCAAGAAAATCAGCTGGAACAAGTTGCTGCATTGATTAAATCTTGTGTGCATCCTGAGTCAGAGCAGAGACCAACAATGAAAGAAGTGAGTGAGAGATTGAGAGAGATAACAAAAATAACACCTGAATCAGCAGTTCCAAAACTTTCTCCACTTTGGTGGGCAGAGGTTGAGATTTCTTCTGTAGAAGCACGCTGA 1992 0.4111 MSKNVKFSRLRDHCEALCFLAACLLFLNLGLCCSLNEEGNALLKLKQRIMSDPFDALSNWIDDEAVVDPCNWFGVECSDGRVVVLNLKDLCLGGTLAPELVNLIHIKSIILRNNSFSGTIPEGIVDLKELEILDLGYNNFSGEVPENLGSNISLAILLLDNNELLVGFSPEINELKMLSECQVDENQLINADKLPACKERSMTWYVTNHLKDGLQHVGQNKVTRSLLESHSKYHRLRKYPPPHPGPLNRGVNPPLNSPSPSGSPPPVPKSAPSSQNDSPNVMSKPGSGAPSKAPSKSTSSKKHAIPILAGVTGGAVFLIFSSIGIYLCITNKVANVRPWATGLSGQLQKAFVTGAPKLKRSDLEAACEDFSNVIGNSPIGTLYKGTLSSGVEISVASLPVTSSKNWSKTLEAQFRKKIDTLSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWVTRLRVAMGMAYCLQHMHQLDPPLTLTNLNSSAVYLTDDYAAKISDMSFSIETASSDQTKAGARKNTDMPLASPESNVYSFGVLLFEMVTGRLPYSADNSSLENWASHYLQAEDQQPLKEMVDPILASYQENQLEQVAALIKSCVHPESEQRPTMKEVSERLREITKITPESAVPKLSPLWWAEVEISSVEAR. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00868 663 MobiDBLite consensus disorder prediction 235 301 - -
Seca8g00868 663 MobiDBLite consensus disorder prediction 240 272 - -
Seca8g00868 663 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Seca8g00868 663 SUPERFAMILY Protein kinase-like (PK-like) 362 652 IPR011009 -
Seca8g00868 663 SUPERFAMILY L domain-like 39 191 - -
Seca8g00868 663 MobiDBLite consensus disorder prediction 273 301 - -
Seca8g00868 663 FunFam Nuclear pore complex protein NUP107 35 193 - -
Seca8g00868 663 Gene3D Ribonuclease Inhibitor 33 231 IPR032675 -
Seca8g00868 663 PANTHER PROTEIN MALE DISCOVERER 2 11 661 - -
Seca8g00868 663 FunFam Inactive receptor-like serine/threonine-protein kinase 342 450 - -
Seca8g00868 663 ProSiteProfiles Protein kinase domain profile. 368 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00868 663 Gene3D Phosphorylase Kinase; domain 1 341 450 - -
Seca8g00868 663 Gene3D Transferase(Phosphotransferase) domain 1 451 644 - -
Seca8g00868 663 Pfam Protein tyrosine and serine/threonine kinase 371 632 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00868 Seca-Chr8 11530457 11535932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00868 19 636 Receptor kinase-like Gene Family AT1G66830 25.318 1.96e-43 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Seca8g00868 PK_Tyr_Ser-Thr 1.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00868 - - gmx:100820416 919.457