Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00857 ATGGGCCATGCAGCCCATGACCCAGTGTTGCCCGAGATTAGGGTTTATCAACCTCTCTCCTTAAAGAGCCGCTTCTCCTCTTTCAAGTTTTCAGTTTGCTGCCGTAGTAGGAGTGGAGTATTTGCTTGGTTCAAATCCAAAATGGCTCGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTGCTCCCAAGCCCTCGTCTGGACCACACAAATCTAGGGAATGCCTCCCACTCATACTCATCTTGCGAAACAGGCTGAAGTATGCTCTGACTTACCGTGAAGTCATTGCTATTCTGATGCAGCGCCATGTCCTTGTTGATGGCAAAGTCAGGACAGACAAAACATATCCAGCTGGTTTTATGGATGTTGTATCCATTCCTAAAACAAATGAGAACTTTCGCCTGCTGTATGACACTAAAGGCCGATTCCGTCTCCACTCAGTTAGGGATGACGAGGGGAAGTTCAAGCTCTGCAAGGTTCGTTCAATTCAATTTGGGCAGAAGGGTATCCCATACTTGAACACCTATGATGGTCGCACAATCCGCTACCCAGACCCTTCCATCAGGGCTAATGACACCATTAAGCTTGATCTAGATGAAAACAAGATTGTTGATTTCATCAAATTTGATGTTGGGAATGTAGTTATGGTAACAGGTGGAAGGAACAGGGGGCGTGTTGGAGTGATCAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACAATCCACGTTCAGGATGCCACTGGACATGAATTTGCAACTCGTATGGGCAATGTGTTCACTATTGGCAAGGGGACAAAACCATGGATATCTCTTCCCAAGGGTAAGGGTATTAAGTTATCAATCATTGAGGAAGCTAGGAAAAGGATTGCTGCTCAACAAGCAACTGCTGCTTAA 936 0.4583 MGHAAHDPVLPEIRVYQPLSLKSRFSSFKFSVCCRSRSGVFAWFKSKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEGKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPSIRANDTIKLDLDENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAAQQATAA. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00857 311 ProSitePatterns Ribosomal protein S4e signature. 55 69 IPR018199 -
Seca8g00857 311 Gene3D - 222 292 IPR014722 -
Seca8g00857 311 CDD S4 98 159 - -
Seca8g00857 311 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 48 301 IPR000876 GO:0003735|GO:0005840|GO:0006412
Seca8g00857 311 SMART s4_6 89 153 IPR002942 GO:0003723
Seca8g00857 311 Pfam RS4NT (NUC023) domain 50 86 IPR013843 -
Seca8g00857 311 Hamap 30S ribosomal protein S4e [rps4e]. 54 285 IPR000876 GO:0003735|GO:0005840|GO:0006412
Seca8g00857 311 SMART kow_9 221 248 IPR005824 -
Seca8g00857 311 Gene3D - 169 219 IPR038237 -
Seca8g00857 311 CDD KOW_RPS4 222 276 IPR041982 -
Seca8g00857 311 Pfam KOW motif 224 257 IPR005824 -
Seca8g00857 311 ProSiteProfiles S4 RNA-binding domain profile. 89 151 - -
Seca8g00857 311 FunFam 40S ribosomal protein S4 48 164 - -
Seca8g00857 311 FunFam 40S ribosomal protein S4 169 219 - -
Seca8g00857 311 Pfam S4 domain 94 137 IPR002942 GO:0003723
Seca8g00857 311 Pfam 40S ribosomal protein S4 C-terminus 259 305 IPR032277 -
Seca8g00857 311 Pfam Ribosomal family S4e 142 216 IPR013845 -
Seca8g00857 311 FunFam 40S ribosomal protein S4 222 292 - -
Seca8g00857 311 Gene3D - 48 164 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00857 Seca-Chr8 11445650 11448548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00857 48 309 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 90.840 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00857 K02987 - gmx:100795220 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00857 8 11445650 11448548 Seca8g00857 8 11445650 11448548 ECH