Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00854 ATGGCGATGGTTTCTTCTGTTTTTCACAAGATCAGTAGTATTTGTGGGAGGAGGCAGAATTGGCGGCTGAAAGCTAAGTTGGTTAGAGTGTGGAATATGTGTGCTGTTGCCACCCCACATGATCCATATGCAATGCAAATGGTCTTTGTAGATGAAGAGGGAGGGAAGATAGAGGCTATTGTTCAGAAGCAGTATATGAAAAAGTTTGCAGAGTGCTTGGTTGAGGGAGAGGTGTACAGAATAACAAATTTCGGTGTGAATGCTAATGGGGGCAACTTCAGGGCTGCTGGGCACGATTACAAACTGTCATTTACATCGTGTACTAAGATTACTCTGTGTCCGGGAGCATCTATTCCTGGCTTAGGCCTATCCCTTATGAAAACTTCTCAGATCAAGAAGACTAAAGGACATTCGGCTTACCTTGTGGATTTCATGGGAATTGTTACTGCTGTCTCTGAGGAACTCAATATCAACAGGGAGGGTAGGCAGACAAGGTTAATGTTGATTGACTTCGTTGATGAATTTGGAAAGATTCGGTGTGCTGTGTTTGGAGATCTCATAAATGTTGTTATGGACTTCCTAGCTCTGTCAGGAACTGGATTGCCTGTGGTTATAATTCAATTCGCAAGGGTTAATGTGTATAAAGGGGAGGCTGGCATTCAGAATGTAATGAATGCTTCAAAGATTTTATGGAATCCAGATCTTCCAGAGGCAGTGGACTTTAAAAATGGACTAGCTGTCCATGAAATTGAAACTGAGGTTGCTATCTCCACCATCACTGATCGCAGACGTGCTCCCTCCATGAGGGATGAGTTCCTTAAACTGTATCCAAAGAAGTCAATTGGTCAACTTTATGATATGCTTGAGGAAGGTTATTTTATAATACTTGGTAGTGTGACTGAGGTTGTTGAAGACTTTAAGTGGTGGTACATGGCATGTTCCTGTATGAAAGCTGTTTGTTATGTTCAAGGAGTCCCTTTCTGCAAAGATTTTCAAAAAAATGTTTATGATATGACCCCAAGGTACAAGGTGAAGCTGCTGGTTTCTGATGGGAATGATAATGCTCATTTCATTTTGTGGGACTTAGACTGCTACTCACTGCTTAATAAAACCTGTAGACAGATGCTTGATGATATTGAGGGTCAGCCACCTGGCTACTTCCCAGAAGAAATTCTGAACTTGGTTGGGAAGGAGATGTTGTTTCGAATAGAAAGCAGTCAGGAAGATTTATTAACATTTGATGATGCTTTCAAGATCAAGAAGGTGTGCTGTGATGTGGATATACTAGCTGAATATAAAGAGCAAGTAGATGATGAAACTCCATTGAAGTTGAAGTTTGCTCCTGCCTTCACAAAGTTGGCCGACTGTAATGCCACTGGGGAAGGACTAGAACTGTCCACATGCTGCAAATCTATTATCACTGATCTTGACATTACCCCTCCATCATGTGTTGCATCTTCCTCGAATGTGGATGAAAGTGGGAGTAGTGGTAAAAAGAAAATTGAAGAACAAGAAGAGGCTCCACTTGAGAGGAAAAAGAGGGTCAGAGTCAGACCAGTTAAGTTAGAGAAAAACTAA 1578 0.4157 MAMVSSVFHKISSICGRRQNWRLKAKLVRVWNMCAVATPHDPYAMQMVFVDEEGGKIEAIVQKQYMKKFAECLVEGEVYRITNFGVNANGGNFRAAGHDYKLSFTSCTKITLCPGASIPGLGLSLMKTSQIKKTKGHSAYLVDFMGIVTAVSEELNINREGRQTRLMLIDFVDEFGKIRCAVFGDLINVVMDFLALSGTGLPVVIIQFARVNVYKGEAGIQNVMNASKILWNPDLPEAVDFKNGLAVHEIETEVAISTITDRRRAPSMRDEFLKLYPKKSIGQLYDMLEEGYFIILGSVTEVVEDFKWWYMACSCMKAVCYVQGVPFCKDFQKNVYDMTPRYKVKLLVSDGNDNAHFILWDLDCYSLLNKTCRQMLDDIEGQPPGYFPEEILNLVGKEMLFRIESSQEDLLTFDDAFKIKKVCCDVDILAEYKEQVDDETPLKLKFAPAFTKLADCNATGEGLELSTCCKSIITDLDITPPSCVASSSNVDESGSSGKKKIEEQEEAPLERKKRVRVRPVKLEKN. 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00854 525 Pfam Domain of unknown function DUF223 47 114 IPR003871 -
Seca8g00854 525 Gene3D - 270 435 IPR012340 -
Seca8g00854 525 SUPERFAMILY Nucleic acid-binding proteins 277 426 IPR012340 -
Seca8g00854 525 MobiDBLite consensus disorder prediction 495 513 - -
Seca8g00854 525 MobiDBLite consensus disorder prediction 485 525 - -
Seca8g00854 525 SUPERFAMILY Nucleic acid-binding proteins 124 246 IPR012340 -
Seca8g00854 525 CDD RPA1_DBD_C 292 427 IPR047192 -
Seca8g00854 525 Gene3D - 6 113 IPR012340 -
Seca8g00854 525 CDD RPA1_DBD_B_like 143 242 - -
Seca8g00854 525 SUPERFAMILY Nucleic acid-binding proteins 8 116 IPR012340 -
Seca8g00854 525 CDD RPA1_DBD_A_like 22 110 - -
Seca8g00854 525 Gene3D - 116 253 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00854 Seca-Chr8 11420462 11423240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00854 1 409 Core DNA Replication Machinery Family AT5G08020 21.911 1.43e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00854 - - lja:Lj6g3v0884310.1 351.288