Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00851 ATGGGTGGGAATTCCCCATGTGCCTCATGCAAGCTTCTGAGACGCCGATGCACAAAAGATTGCACCTTTGCTCCTTATTTCCCTTCTGATGAACCCCAAAAGTTCGCCATCGTTCACAAGGTTTTTGGCGCTAGCAACGTTAGCAAAATGTTGCAGGAACTTCCAATTCACCAAAGAGCAGATGCAGTGAGCAGTCTAGTGTATGAGGCAAATGCAAGAGTGAGAGACCCAGTGTATGGTTGTGTTGGAGCCATATCTTACCTTCAAAATCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTTGCTCAAGCAGAGATACTCTGCATCCAGATGCAACATGAGCCAGTGATTAATCCAAGCCCAGAAATAATTAGCCCAGATCAGAAATCTTACTATCTACAAGATGACCTCTCTCAGTATCTCAATTTTGGCAATTCTGGGAATGTAATTCATGACTCTCTCAAGAGAGAGAGCATCTATGGCTATGGACATGACATGGTTTCTTGA 507 0.4398 MGGNSPCASCKLLRRRCTKDCTFAPYFPSDEPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPVINPSPEIISPDQKSYYLQDDLSQYLNFGNSGNVIHDSLKRESIYGYGHDMVS. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00851 168 Coils Coil 85 105 - -
Seca8g00851 168 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Seca8g00851 168 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Seca8g00851 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00851 Seca-Chr8 11387552 11388760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00851 3 128 AS2 family AT2G30130 82.540 1.98e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g00851 LOB 1.5e-42 No_clan