Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00847 ATGAACAGAAAAAGGCGTCTAAATCAGTTGAAGTCTCCATTCAATTCTTACCCTTTTGAAGCAGTTATCTTTGGCTCATGGAAAGCAGTGGAGTTCATAACAATCGAGTCAGGAACTATGACCGTACATTTTATAGATAATCACCACATGGCTATGCAGAAAGGCCCCTTGTCAGATGTTCGAACAAGGTCAAGGAAAGCTACTTCATCAGATTGCTCCTGTTTTTTACGTCCGGGAATTGACATATGTGTGCTAGCAGCCCCTCAACGTACTGATAATTCAGATGAATTTGGTCTCAAGCCTGTTTGGCTTGATGCTAAAATAAGTTCTATACACAGACAGCCCCATGAATCTGAGTGCGCATGTGAGTTTTATGTCAACTTCTATGTTAATCAAGGTTCACTTGGTGCAGAGTTAAGAACTCTTAATAAGGAGATTAAAGTAGTTGGAATCAATCAAATCTCCATCCTCCAAAGACTTGAACATAATCCTTGTGAAGATCAGCACTACCGGTGGGCTTCATCTGAGGACTGCTCTGTAATATCACACACTAAATTGCTTTTGGGAAAATTTTTGACCGATATATCATGGTTAGTTGTGGCATCTGTTTTAAAGAAGGCTTCATTCTGTGTAAGATCTGTAGAAAACAAACTCGTGTATCAAATTTTGGAAAGAGGTGTTATTAGCACTCCATTGAATGCTGAGTCTCATATAAATGTTGTGAATTTCAAAGTAGACAATGGCATGTTAATACCCATTGTTTCTCAAGTTGCTATAACTGGCACCAAAAGGGCTGATCATGCACATGAATCCCATGAAGATAAAGTGTCACCATCTTATAATGTTGAGGGCTTACGGCGTTCCAAACGTCGGAATGTACAACCTGAACGTTACATTGGTTGTGATGTTCCTAAGCTTGATGTTGGTTCTTTCAGAAACAGGCCACCAGTTAAGATAGACACATGGAAAGATGATGAAATGTCATTGCCATTATCATCCCTGTTTGGTTTGCAGCAAAACTGTCCAGAAAAGAATGCTGACAACTGTCAAAAGGTCAACAAGGTGAAAACGTGCCGGGAGCTTCTGGTGTACAATAGGAGGAAGGGTAAAAACAGAAAGATAAATTCAGGTGATGATGATCAAAATGAACATCAAAATCAACTTGCTATTATTCCTCTTCCTGATCATGGCAATCCAATAGCTGTTGAGCATAGTGATCTAACTGACAAGGTTGCTAGAAGTTCTGAACATGAATCTACTGAAATGTCTTCCAAATATTATCATCTGGTTAATAAACCTAAACCAAACAAGAACAGTATTGGTTTGTTAACTCTTGAGCCTGCAAGGTCAGATGATGCAGGGAAGAATGATGATCTTTCTTTGAGATACCATTACAGTTATGGCACCCCTAAGTTACAGAAGAAGAGTTTATGTGATTTGGATGATATGGATCTTGGAAATAAATGGGGAGGGATAAAATCTAATAAAGGACCTAAAGAGAGAACATATCGTTCAACATGTTCAACAAATAGAAAATATGGCGAAGAAAGAACTTATAAAGACAGGACCTTAAAGGGATCTGCCTACCAGGATTTGATAAATTTATACCTCAAGAATATTGATACAAGGCCAGACACAGAAGAAACGCCTATTCAGGACCAGTGGAAGCAATGCAATACAACAAGCAGTTTTGGACAAGAGAGAGAAACAGAGACATCACATACAAAGGATGCAGGAGAAGAATCTGAAAACGAAATGTTGTGGAGAGAATATGATATGGCATTGGCATCACTTTATCTTGATGAAGGCATAGAGGGCTCAAATGCTGCCACTGAGGAAAAATCGAAAAACGTTTGTGAGCATGATACTAGATTGGATGAACAACTTGGAATATACTGCCTTAAATGTCATTTTGTGATCACCGAGATCAGAGATGTTATGGCACCCTTTGCTAAACAACATAGTACAGTGTGGTACCCAGAGGAGAAGCAGTGTGCTGGAGAAGAGGCAGAGGCCAAAGCAGATGAAGATGGTGATATCAATTTTTTCTCAACTAGTGCTTCTCCTGATGAACCTATATCTGAAGAGAATGATAACGTTTGGGCATTAATTCCCGAACTCAGAAAAAAGTTGCATGTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAATATTGCAGGGTCTACAAATCCAAGACTTATGGATGCAGAATCTGAAAACAGAGGTGGCTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTTCTCATTATTGCTTTTCTCGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGACCACTAGTCCTTGCTCCAAAAACAACACTGTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACCTACAGGGTATTCAAGCAGAAATCAATCGTTTTTCCTGGAATTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTGGAGAAGATACAAAAATGGCATTCACAACCGAGTGTTCTAATCATGGGCTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTATGCACACAGGAAGTTTATGGCTAAAGTATTGAGGGAAAGTCCTGGGATCCTGGTGCTGGATGAAGGGCACAATCCTAGAAGCACTAAATCAAGGTTGAGAAAAGTTTTGATGAAAGTACAGACAGAATTGAGAATATTACTTTCAGGTACTTTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTCTGCTTGGCAAGACCAAAATTTGCTTATGAAGTACTGGAAGCATTAGACCCAAAATACAGGAGAAAAAGGAAAGGAACAGAAAAATCACGTACTTCAATAGAGTCACGGGCTAGGAAATTCTTCTTAGATACAATTGCTAAGAAAATTGACTCAAATATTGGTGATGAGAGGATGCAAGGTCTAAACATGTTGAGAAATGTGACAAATGGTTTTATAGATGTTTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTACAAATTTATACATTGCTAATGAATACAACTGATATACAGCAGGAGATTTTACAGAAACTGCACAAGAAAATGGCTAAGTGTAATGGATACCCTCTTGAGTTAGAGCTTTTGATAACCCTTGGTTCAATACATCCTTGGTTGGTCAAAACAGCTGTATGTGCTGAGAAGTTTTTCACTAAGGAACAACTGGTGGAGCTAGATAATTGGAAGTATGATTTGAAAATAGGGTCAAAAGTAAAATTTGTTTTGAGTCTTATCTTTCGCGTTTTCCAGAATGAGAAGGTTCTTATCTTCTGCCACAACATTGCACCTGTCAAATTATTTCTAGAATATTTTGAGAGGTGCTTCCGCTGGCAAAGAGGCCGGGAGGTTTTGGTACTAACTGGGGAATTAGAGCTCTTTGAACGTGGGAGAGTAATGGATAAGTTTGAGGAACCTGGTGGAGTATCTAAGATACTCCTTGCTTCAATCACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCCTCTCGTGTCATTATGTTGGATTCAGAGTGGAACCCTTCAAAAACAAAGCAGGCTATTGCACGGGCCTTTCGTCCTGGTCAGCAAAAAGTTGTTTATGTGTATCAGCTTTTGGTGACAGGTTCATTGGAGGAAGATAAATACAGAAGAACCACTTGGAAAGAGTGGGTATCAAGCATGATTTTTAGTGAGGCCTTTGTGGAGGACCCTTCTAAATGGCAAGCTGAGAAGATTGAAGATGATATACTCAGAGAAATGGTTGCCGAGGACAAGTCAAAAGTATTCCATATGATAATGAAGAATGAGAAAACTTCAACAAACAAATGA 3876 0.3911 MNRKRRLNQLKSPFNSYPFEAVIFGSWKAVEFITIESGTMTVHFIDNHHMAMQKGPLSDVRTRSRKATSSDCSCFLRPGIDICVLAAPQRTDNSDEFGLKPVWLDAKISSIHRQPHESECACEFYVNFYVNQGSLGAELRTLNKEIKVVGINQISILQRLEHNPCEDQHYRWASSEDCSVISHTKLLLGKFLTDISWLVVASVLKKASFCVRSVENKLVYQILERGVISTPLNAESHINVVNFKVDNGMLIPIVSQVAITGTKRADHAHESHEDKVSPSYNVEGLRRSKRRNVQPERYIGCDVPKLDVGSFRNRPPVKIDTWKDDEMSLPLSSLFGLQQNCPEKNADNCQKVNKVKTCRELLVYNRRKGKNRKINSGDDDQNEHQNQLAIIPLPDHGNPIAVEHSDLTDKVARSSEHESTEMSSKYYHLVNKPKPNKNSIGLLTLEPARSDDAGKNDDLSLRYHYSYGTPKLQKKSLCDLDDMDLGNKWGGIKSNKGPKERTYRSTCSTNRKYGEERTYKDRTLKGSAYQDLINLYLKNIDTRPDTEETPIQDQWKQCNTTSSFGQERETETSHTKDAGEESENEMLWREYDMALASLYLDEGIEGSNAATEEKSKNVCEHDTRLDEQLGIYCLKCHFVITEIRDVMAPFAKQHSTVWYPEEKQCAGEEAEAKADEDGDINFFSTSASPDEPISEENDNVWALIPELRKKLHVHQKKAFEFLWQNIAGSTNPRLMDAESENRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQKSIVFPGIPKPTDDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMREDSKYAHRKFMAKVLRESPGILVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAYEVLEALDPKYRRKRKGTEKSRTSIESRARKFFLDTIAKKIDSNIGDERMQGLNMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNTTDIQQEILQKLHKKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFTKEQLVELDNWKYDLKIGSKVKFVLSLIFRVFQNEKVLIFCHNIAPVKLFLEYFERCFRWQRGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDDILREMVAEDKSKVFHMIMKNEKTSTNK. 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00847 1291 MobiDBLite consensus disorder prediction 558 583 - -
Seca8g00847 1291 CDD DEXHc_ATRX-like 711 936 - -
Seca8g00847 1291 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 736 935 IPR014001 -
Seca8g00847 1291 Pfam Helicase conserved C-terminal domain 1094 1209 IPR001650 -
Seca8g00847 1291 Gene3D - 1013 1291 IPR027417 -
Seca8g00847 1291 Pfam SNF2-related domain 708 982 IPR000330 GO:0005524|GO:0140658
Seca8g00847 1291 CDD SF2_C_SNF 1085 1221 - -
Seca8g00847 1291 Gene3D - 685 978 IPR038718 -
Seca8g00847 1291 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 52 1289 IPR044567 GO:0080188
Seca8g00847 1291 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1096 1257 IPR001650 -
Seca8g00847 1291 MobiDBLite consensus disorder prediction 666 694 - -
Seca8g00847 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1274 IPR027417 -
Seca8g00847 1291 SMART helicmild6 1125 1210 IPR001650 -
Seca8g00847 1291 MobiDBLite consensus disorder prediction 569 583 - -
Seca8g00847 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 945 IPR027417 -
Seca8g00847 1291 SMART ultradead3 707 950 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00847 Seca-Chr8 11272723 11280982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00847 1083 1228 RAD5 or RAD16-like Gene Family AT5G43530 35.616 1.45e-13 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g00847 SNF2_N 4.9e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00847 K10875 - gmx:100811703 1929.45