Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00846 ATGGGTGCTGCTTATGATCAAGGTTCTAACAAATCTCTTGTGTCAATGGATTCTTCTAAAAAGAGGAAAAGTAGGAGCAGAGGGGATGGGACTAGATCCGTGGCTGAGACTCTGGCAAAATGGAAGGAGTACAATGAGCATCTTTATTCTTCTGGTTCTGGCAAAAGTGATGGTAGACCAACTCGTAAAGCCCCAGCCAAGGGTTCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGACCCCAAAACTCACAGTGTAACTATAGAGGTGTTAGGCAGAGAACATGGGGAAAATGGGTTGGTGAGATTCGGGAACCAAATAGAGGAAGTAGGCTTTGGTTAGGTACTTTCTCTACTGCACAAGAAGCTGCTCTTGCATATGATGAAGCTGCTAGGGCCATGTATGGTCCTTGTGCACGCCTCAATTTTCCTCACATCTCAGATTATACTTCTATTAGAGAACAATTGAAGGAATCTTCCTCCGCGGGTGGAACATGTTCTTGTTCTTCAGTGGCAACTCCTGCAACCTCTGACACAACTACTATATCCAATCAATCCGAGGTTTGTGCAGCTGAGGATGTTAAGGAGAAACCTCGACCTGTCAATATCAACAATACTGTCAATGTTTGTCATCAAGTTTATGAATCTGGATCACCAACTAGTAAAATGAAACAAGTGCCGAAGGATGAGCCTGTGGATCTCACAGATGACCCTGCATCTGGGGAAATCCAAGATATCTTCAAACCTGAAAGAACACATGATGAAGGGAAGGTTGGCGAGGATGTATGTATAGATCAGATGGATTTTTCATGGATTGATAACATTGATTTTAATGGTGATTACTTGAAGAGCTTCTCCATGGATGAGTTATTTCAGGTGGATGAACTTTTGGGGCATATAGACAACAATCCGATAGATAACTCTGGGTTGATGCAAGGTTTGGATTTTGGACTAGTGGGCTTTCCTGAAGAAAGTAATCCTCAGGCTGAGACTTCAAGCTTTATGTATCAATTGCAAAATCCAGATGCCAAGCTGCTGGGAAGTTTGCCACACATGGAACAAACACCATCTGGTGTTGATTATGGATTGGATTTCCTAAAAACAGAAGAGGCAGGGGACTATAATGGTGGAGGGGAAGAGTCAAGATTTCTTAATCTGGATTATGATCTGAACAATGATTCAAAAGGAATGCAAGCAAGCAAGGAAGGGTGA 1209 0.426 MGAAYDQGSNKSLVSMDSSKKRKSRSRGDGTRSVAETLAKWKEYNEHLYSSGSGKSDGRPTRKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPHISDYTSIREQLKESSSAGGTCSCSSVATPATSDTTTISNQSEVCAAEDVKEKPRPVNINNTVNVCHQVYESGSPTSKMKQVPKDEPVDLTDDPASGEIQDIFKPERTHDEGKVGEDVCIDQMDFSWIDNIDFNGDYLKSFSMDELFQVDELLGHIDNNPIDNSGLMQGLDFGLVGFPEESNPQAETSSFMYQLQNPDAKLLGSLPHMEQTPSGVDYGLDFLKTEEAGDYNGGGEESRFLNLDYDLNNDSKGMQASKEG. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00846 402 MobiDBLite consensus disorder prediction 217 240 - -
Seca8g00846 402 MobiDBLite consensus disorder prediction 48 86 - -
Seca8g00846 402 Gene3D AP2/ERF domain 86 145 IPR036955 GO:0003700|GO:0006355
Seca8g00846 402 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Seca8g00846 402 FunFam Ethylene-responsive transcription factor 2 85 144 - -
Seca8g00846 402 MobiDBLite consensus disorder prediction 1 34 - -
Seca8g00846 402 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Seca8g00846 402 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Seca8g00846 402 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Seca8g00846 402 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Seca8g00846 402 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Seca8g00846 402 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 19 359 - -
Seca8g00846 402 CDD AP2 85 144 IPR001471 GO:0003700|GO:0006355
Seca8g00846 402 MobiDBLite consensus disorder prediction 16 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00846 Seca-Chr8 11250154 11252388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00846 9 386 AP2-EREBP Transcription Factor Family AT2G40340 38.243 5.09e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca8g00846 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00846 - K09286 gmx:100800134 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00846 8 11250154 11252388 Seca8g00846 8 11250154 11252388 ECH