Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00842 ATGGACACTAATAGAGAGAAGAAGAAGAAGAAGAAGAAGACTCACCAAATTTCGCAACTTGGGATGAGAAATGCAGCAGATTGGCACCATTTCCACCACAACCCACGTCATTTTTTCCGGTTGTTTTTCTGGGTCTACTGTTTCTGCCTTCTTCTGCTCTCACTTAAGCCTGTGTTAGGTGAAGAGCGTTGGGATGGAGTGGTTGTGACACAGTCAAACTTTTTAGCACTTCAAGCATTCAAGCAAGAGTTGATTGATCCCAAAGGCTTCCTTAGAAGCTGGAATGACAGTGGCTATGGAGCTTGTTCTGGAGGTTGGGTTGGTATCAAGTGTGCTCAGGGACAGGTTATTGTAATCCAGCTTCCATGGAAAGGGTTGCAAGGGCGTATCACTGAGAGGATTGGTCAACTTCAAGGGCTTAGAAAGCTTAGTCTTCATAATAACCAAATTGGTGGTTCAATCCCTTCAGCATTGGGACTTCTTCTTAATCTAAGAGGGGTTCAACTCTTCAATAATAGGTTTACAGGGTCTATCCCACTTTCATTAGGTTCATGTCCTTTGCTTCAGTCTTTAGACCTTAGTAACAATTTGCTCACTGGGACAATCCCTGATAGCCTTGGGAATTCCACTAAGCTGTATTGGCTTAACTTGAGCTTCAATTCCTTCTCTGGTCCAATACCATCTAGCCTAACTAGCTTACCTTCTCTCACCTTCTTATCTCTTCAACATAACAATCTCTCAGGCTCTATTCCTAACTCTTGGGGTGGTAGCTTGAAGAACAGCTTCTTTAGGCTTCAAAATCTGATCTTAGATCATAACTTCTTGAGTGGAAGCCTTCCTGCTTCTTTGGGCAGCTTAAGAGAGCTCAAAGAGATTTCTTTTAGTAATAACCAGTTTAGTGGAGCTATACCAAATGAAATAGGAGGCCTTTCTAGGCTTAAGACAGTGGATTTTTCTAATAATGCCTTGAATGGAACCTTGCCTGCTACTCTCTCTAATTTATCCTCACTCACTATGTTGAATGTAGAGAACAACCACCTTAGCAATCAAATCCCAGAAGCTTTAGGCAGATTACATAATCTTTCTGTTCTAATTTTGGGCAGAAACCAATTTAGTGGCCACATTCCCAAAAGTATTGGAAACATTTCAATGCTTGCACGGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCTTTTGGCAATCTAAGTAGTCTTAATTTCTTCAATGTTTCTTATAATAACCTCTCTGGTCCAGTTCCAATTCTACTTGCTCAGAAATTTAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGGTACAGCCGTTCAACCCCATGTCCCTCACCAGCTCCTTCTGAAGGACAAAGAGTCCCTGCTGCACCTTCTGAAGTACAAAAACACCACCATCACAAGAAACTAGGTACCAAAGACATAATTCTCATAGTAGCAGGAGTGCTCCTTGTAGTCCTGATAACTATCTGCTGCATCTTGCTCTTCTGCCTAATGAGAAAAAGAGCAACATCAAATGCAGAGGGTGGCCAGGCCACAGGGAGAGCTGCTGCTACCAGGACAGAGAAAGGAGTCCCTCCTGTCGCTGGTGAAGCTGAAGCAGGTGGTGGTGAGAATGGAGGTAAACTAGTCCATTTTGATGGACCACTGGCTTTTACCGCAGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGTACTTATGGAACTGTGTATAAGGCTACATTAGAGGATGGAAGTCAAGCTGCAGTGAAACGATTAAGGGAAAAGATCACAAAAAGTCAGAGAGAATTTGAATCTGAAGTTAGTGTTATAGGGAGAATTAGACACCCAAATCTTTTGGCACTAAGAGCCTATTACTTGGGACCCAAAGGAGAAAAGCTTCTGGTTTTTGATTACATGCCTAAAGGAAGTCTTGCTTCTTTCCTGCATGCTCGTGAACCTGAAACAATCATTGATTGGCCAACAAGGATGAATATAGCACAGGGAATGGCTCGTGGCTTGTTTTACCTACATTCTCATGAGAACATTATACATGGGAACCTTACATCCAGCAATGTCTTGCTTGATGAGAATACAAATGCTAAAATAGCTGATTTTGGTCTTTCTCGGTTGATGACAACTGCTGCTAATTCTAATGTAATTGCTACTGCTGGAGCATTGGGATACAGAGCACCTGAGCTATCAAAACTTAAGAAAGCCAACACAAAAACTGATGTATACAGTCTTGGTGTCATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTATGAATGGCGTAGATTTACCTCAGTGGGTTGCCTCTATTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGATGTTGAGTTGATGAGAGATGCATCAACAAATGGCGATGAGTTGCTAAACACTTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGCTCAGCAAGTTCTCCAGCAACTAGAAGAGATTAGACCACAGACATCATCCATTTCTGGTGATGAAGGAGCCATCCCTTCCACCAGTGAATAA 2574 0.4239 MDTNREKKKKKKKTHQISQLGMRNAADWHHFHHNPRHFFRLFFWVYCFCLLLLSLKPVLGEERWDGVVVTQSNFLALQAFKQELIDPKGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLQGRITERIGQLQGLRKLSLHNNQIGGSIPSALGLLLNLRGVQLFNNRFTGSIPLSLGSCPLLQSLDLSNNLLTGTIPDSLGNSTKLYWLNLSFNSFSGPIPSSLTSLPSLTFLSLQHNNLSGSIPNSWGGSLKNSFFRLQNLILDHNFLSGSLPASLGSLRELKEISFSNNQFSGAIPNEIGGLSRLKTVDFSNNALNGTLPATLSNLSSLTMLNVENNHLSNQIPEALGRLHNLSVLILGRNQFSGHIPKSIGNISMLARLDLSLNNLSGEIPVSFGNLSSLNFFNVSYNNLSGPVPILLAQKFNSSSFVGNIQLCGYSRSTPCPSPAPSEGQRVPAAPSEVQKHHHHKKLGTKDIILIVAGVLLVVLITICCILLFCLMRKRATSNAEGGQATGRAAATRTEKGVPPVAGEAEAGGGENGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKSQREFESEVSVIGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHAREPETIIDWPTRMNIAQGMARGLFYLHSHENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEAMNGVDLPQWVASIVKEEWTNEVFDVELMRDASTNGDELLNTLKLALHCVDPSPSARPEAQQVLQQLEEIRPQTSSISGDEGAIPSTSE. 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00842 857 Pfam Leucine rich repeat 187 246 IPR001611 GO:0005515
Seca8g00842 857 CDD STKc_IRAK 573 838 - -
Seca8g00842 857 FunFam Leucine-rich repeat receptor-like kinase 72 182 - -
Seca8g00842 857 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 260 455 - -
Seca8g00842 857 Pfam Protein tyrosine and serine/threonine kinase 570 835 IPR001245 GO:0004672|GO:0006468
Seca8g00842 857 Gene3D Ribonuclease Inhibitor 228 326 IPR032675 -
Seca8g00842 857 Gene3D Ribonuclease Inhibitor 71 227 IPR032675 -
Seca8g00842 857 Gene3D Ribonuclease Inhibitor 327 453 IPR032675 -
Seca8g00842 857 SMART LRR_typ_2 137 161 IPR003591 -
Seca8g00842 857 SMART LRR_typ_2 334 358 IPR003591 -
Seca8g00842 857 SMART LRR_typ_2 286 310 IPR003591 -
Seca8g00842 857 SMART LRR_typ_2 233 256 IPR003591 -
Seca8g00842 857 SMART LRR_typ_2 185 209 IPR003591 -
Seca8g00842 857 SUPERFAMILY Protein kinase-like (PK-like) 571 839 IPR011009 -
Seca8g00842 857 MobiDBLite consensus disorder prediction 516 544 - -
Seca8g00842 857 SUPERFAMILY L domain-like 110 448 - -
Seca8g00842 857 Gene3D Transferase(Phosphotransferase) domain 1 645 850 - -
Seca8g00842 857 Gene3D Phosphorylase Kinase; domain 1 573 644 - -
Seca8g00842 857 FunFam Pollen receptor-like kinase 1 644 848 - -
Seca8g00842 857 ProSiteProfiles Protein kinase domain profile. 567 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00842 857 MobiDBLite consensus disorder prediction 837 857 - -
Seca8g00842 857 FunFam Leucine-rich repeat receptor protein kinase EMS1 183 259 - -
Seca8g00842 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 264 838 - -
Seca8g00842 857 FunFam Leucine-rich repeat receptor-like protein kinase 552 643 - -
Seca8g00842 857 Pfam Leucine rich repeat N-terminal domain 75 111 IPR013210 -
Seca8g00842 857 MobiDBLite consensus disorder prediction 451 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00842 Seca-Chr8 11170634 11174027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00842 64 840 Receptor kinase-like Gene Family AT3G51740 65.296 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca8g00842 PK_Tyr_Ser-Thr 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00842 - - gmx:100811174 1332.78