Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00821 ATGGTTTCTAAAGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACTCCTTCGTTCTATTACAAACTCTCATGCTCTGAACAAAACCTCGATCATAATCGATGCATCAAGGTATATTGAAAAGCTTAAGCAAAAAGTTGAAAGACTGAATCAAGAGATAGCCTCTGCAGAAACTTCAAGTGTCCACAATCCCCTGCCTATGCAGGTTACCGTAGAAACCCTAGAAAAGGGATTTCTTATAAATGTTTTTTCAGCAAAATGCTGTCCAGGTCTTCTTGTTTCCGTATTAGAGGTCTTTGAAGAGATGAGACTCACAGTGCTGGAAGCTAGGGTTTCTTGTACAGACACTTTTCGATTTCAAGCAGTTGGAGGAGAAGTAAGATTAATATATATATATATATATATATAG 411 0.382 MVSKEQKRAALHEKLQLLRSITNSHALNKTSIIIDASRYIEKLKQKVERLNQEIASAETSSVHNPLPMQVTVETLEKGFLINVFSAKCCPGLLVSVLEVFEEMRLTVLEARVSCTDTFRFQAVGGEVRLIYIYIYI. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00821 136 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 124 - -
Seca8g00821 136 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 63 IPR036638 GO:0046983
Seca8g00821 136 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00821 Seca-Chr8 10901777 10904287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00821 11 127 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 31.783 8.27e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00821 - - gmx:100306253 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00821 8 10901777 10904287 Seca6g02002 6 79077159 79079628 ECH
Seca4g10908 4 246685178 246687254 Seca8g00821 8 10901777 10904287 ECH
Seca8g01425 8 24208227 24209666 Seca8g00821 8 10901777 10904287 ECH
Seca8g00821 8 10901777 10904287 Seca8g00821 8 10901777 10904287 ECH
Seca8g00821 8 10901777 10904287 Seca6g02002 6 79077159 79079628 PCT