Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00819 ATGAATGTAGCTTCAATTCCAATTGCTGAAGGTGTAAAGAAATGGGTCGATAATATTCACAGCAATATTGTGCAACATGGCCAAGAGTGTGTTACTAACTATATACCACACTTGGAAATGGAGTTTGAATCTGAGGTAGTTGCCTATGAATTTTACAATGAGTATAGTAAGAGGGCTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAAAAAAGATGGAATTTTGACTTCAAGAAGATTCTCATTCTTCAAAGAGGGCAAACGAGGCGTTGACAAACGAGACCACTTGACGAAAGAGCCTAGAGCAGAAACCAGAACAGGATGTGAAGCCCGTATGGTTATTTCACTTGATCAAAAGATAGGAAAATACAAGGTTATTGACTTTATAGCTCAACATAATCACCCTCTTCAATCGACAAAATATGCTTATATGATTCGTTCTCATCGAAAAATTTCTGAGTCACAAGCATCACACATTGTATTGGCAGATGCATCTGGATTGAAACCAAAATATTTTCATGAATATGCGTCCAAGCAATCTGGTGGAATAGACAGTGTTGGTTACACAAGACAAGACCACAAGAATTACCTTCGAACTAAAAGGAATCAATGTTTAAGGCAGACAGTTGTTTTTGGGGCAACATTGCTATATGATGAAACAATCCCTTCTTTTCAATGGTTATTTGAAACTTTCCTAAAAGCAATGGGTGGAGAAAAGCCTAAAACCATTCTAACCGATCAAGATGCAACAATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTATGCACTTGGCATATAAGAGAAAATGCCCTAAGACATGTGAACCACCTTTATCAAAAGAATTCACAATTTTGCTCAGATTTTGAAGCATGCATTGATCTACATGAGGAGGAATGTGAATTTCTGAAGGCATGGAATGAACTACTTGTTGATCATAATGTTTCCGATGATTCATGGCTACATGGGATTTTTCGAGTGAAGGAAAAGTGGGCATGGGCTTATGTTCGAAAAAACTTTCACTGCAGTAAAGAGCGAAAAGTAGTGGGGAATGTGGGGGATGAAAAGGTTGCATGTGATTGTCGTAAATTTGAGACTCATGGTATCTTATGCAGTCATGCTTTGAAAGTTTTAGATGTGATGAATATCAAGCTAATTCCTCAGCACTGTATACTAAAGCGATGGACAAGAGATGCAAGGTTGGGAAGTAACCGAGATTGGAAAGGACAACATATTGAATTGGACATAAAAGCTCATTTCACGAAGAGACACAATGAGTTATGTCCTTGGATGATTAAATTGACAGATAAAGCATCCCAATCTCATGAAACTTGCACCTTTTTGTCCATAGTTTGTGAAGAGTCCAACAAAATAATTGATGTTATGTTGGCTAAAAATTCTATGGGTGGAGAATCAATTGGAAAGTGTGATGTATCCATATCAATTGCAAATGAGAAAATTGACAACAATGTGAACAACATTCATTTTGGTGGGGCGAAAGGCATAAAGAAGCGAGATTGCTCATTTAAGGGTACAAAACGACCTAAATCTTGGGTTGAGAAGTTGGCTCGAAAAAGAAAGGGAAACCTATCACAAAAAAAGAGAAAGACTCAAGAAAATTTGCAACCATTGCATTGCATGTCAATGTCTCAATCTTCAAATCATATAAATCAGAATGAAAGCCAATATGGAAGTGGGACCCAACTTTAG 1728 0.3721 MNVASIPIAEGVKKWVDNIHSNIVQHGQECVTNYIPHLEMEFESEVVAYEFYNEYSKRAGFGIRREYGNKSKKDGILTSRRFSFFKEGKRGVDKRDHLTKEPRAETRTGCEARMVISLDQKIGKYKVIDFIAQHNHPLQSTKYAYMIRSHRKISESQASHIVLADASGLKPKYFHEYASKQSGGIDSVGYTRQDHKNYLRTKRNQCLRQTVVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDATMAKAISLVMPETFHGLCTWHIRENALRHVNHLYQKNSQFCSDFEACIDLHEEECEFLKAWNELLVDHNVSDDSWLHGIFRVKEKWAWAYVRKNFHCSKERKVVGNVGDEKVACDCRKFETHGILCSHALKVLDVMNIKLIPQHCILKRWTRDARLGSNRDWKGQHIELDIKAHFTKRHNELCPWMIKLTDKASQSHETCTFLSIVCEESNKIIDVMLAKNSMGGESIGKCDVSISIANEKIDNNVNNIHFGGAKGIKKRDCSFKGTKRPKSWVEKLARKRKGNLSQKKRKTQENLQPLHCMSMSQSSNHINQNESQYGSGTQL. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00819 575 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 358 462 IPR031052 GO:0006355
Seca8g00819 575 Pfam SWIM zinc finger 358 385 IPR007527 GO:0008270
Seca8g00819 575 ProSiteProfiles Zinc finger SWIM-type profile. 352 388 IPR007527 GO:0008270
Seca8g00819 575 MobiDBLite consensus disorder prediction 556 575 - -
Seca8g00819 575 SMART 26again6 363 390 IPR006564 GO:0008270
Seca8g00819 575 Pfam MULE transposase domain 207 276 IPR018289 -
Seca8g00819 575 Pfam FAR1 DNA-binding domain 50 139 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00819 Seca-Chr8 10874201 10877141 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g00819 FAR1 3.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00819 - - mtr:120578131 403.29