Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00812 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGCAAGAGGATCAAGAGGGAAGTAGATGGTTCTTCTCAAAAGGGAAGAAGACACATGTTAGGCCCTCCTGGAATGCTTAATACCACCACCCCTTGTGCTGCATGTAAGTTGTTGAGAAGAAGGTGTGCTCAAGAATGTCCTTTTTCTCCATATTTCTCTCCCCATGAGCCCCAAAAGTTTGCTTCTGTCCACAAAGTCTTTGGTGCCAGCAATGTCTCAAAGATGCTAATGGAGGTACCTGAGAGTCAGAGAGCAGATGCTGCAAATAGTCTAGTTTATGAGGCTAATGTAAGGCTAAGAGACCCAGTTTATGGATGCATGGGTGCAATTTCATCTTTGCAACAACAAGTTCAATCTTTAATAGCTGAACTTAATGCTGTAAGGGCAGAAATACTTAAATACAAACTCAGGGAAGCTAACATGACACCTTCCTCATCTCATGTTTTACTTCCTTCCTCTGAGGATGTATCAATTGCTGCTCCACCTCCTCCAACACTACCAATGCCTCCTCTTCCTATAACTTCTTCTTCCATTTACACACAACAGGTGAATCCTACCAATTATAGCACAATTTCAAGTGAGAATAGTTCCTATTTTGGTTAA 636 0.4182 MSRERERFDEIGKRIKREVDGSSQKGRRHMLGPPGMLNTTTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQVQSLIAELNAVRAEILKYKLREANMTPSSSHVLLPSSEDVSIAAPPPPTLPMPPLPITSSSIYTQQVNPTNYSTISSENSSYFG. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00812 211 Pfam Lateral organ boundaries (LOB) domain 42 138 IPR004883 -
Seca8g00812 211 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Seca8g00812 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 161 - -
Seca8g00812 211 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00812 Seca-Chr8 10815354 10816477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00812 27 159 AS2 family AT2G40470 86.765 1.47e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca8g00812 LOB 4.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00812 - - gmx:100790799 328.561