Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00763 ATGATTTCGCAGCTGAATCTAAATGGCTTCTTTCTTTTCAACCCTTCTTCCATGCTTCAAAAACCTGTCTCAAGGAGGCAAAACCCGTCTTCTCTTTCTCTCAAAGTTCGAAGCTTTCGCGGTTCGGAGCCTCCCCATGTTCCTTCTTTTTCTCCTGTGAAACCCCTTCGTGTGCCTCGGCACGTGAGAACCGAAGCACAGGTTGTGCTTATGGATTACCTCCATTCAACTCGTGGCTACAGCTTCTTGGATGCCGAGTACATCAGCAAAAACTCGCCGCGCTTCGTTGAATCTTTGGTTTCAAAAATCGGTGGTGAAGAAGGTGATGTTTCTCGATCATTGAGGAAGCTCCTGAGGTATAACCCTGTTAACGAGTTTGAACCATTTTTTGAGAGTTTAGGGATTAGCCAATCTGAGTTACCTTTGGTTCTCCCTCCTGATATGATTTTTTTGAGTGATGATCATGTTTTGCTTGATTGTTTTCATGCTCTTTGTAATTATGGGGTCCCTAGAAACAGAATGGGAAAAATTTATAAGCAAGCAAAAGAGATTTTTTGGTATGATAGTGGATTGTTGCTGTCAAAATTTCAAGCTTTTGAAAATTTGGGTTTGAGTAAATCAGCAGTCATCAAGCTTGTTGTTTGTTGCCCTTCACTTTTGGTTGGTGCTATGGATTGTGAGTTTGTTGATGTTATTGGTTGGTTGAAAAAAATTGGGGCTGAAAGTGATTGGATTATGAATTGCATGTCTTATTCAAGAACTTATAGTTGGAAAAAAATGCTTGAAACCATTCAATTTCTTCATAAAGTGGGCTATTCTGAGAAACATATGCACAATTTGTTTAAGGAAAATCCTAGATTGTTATTAGAAGGTTTTGGGAAGAAGCTGTTCTTATTTTTGGGTCGATCACTTAAGTTGGGTCTCGAGATGAATGTGATTTGTTCTTATTTCATAAAGTATCCCTATATAATGTCAAGTAAGAGTGCTAAAAATCTCATAAGGGTGATTGGTTTTCTGTATATTATTGGAATGGGAAAAGATGACATTGCAAACATTTTGTCTAACCACATGCACCTCCTGTGCAAACATTCGTGGAAAGGTCATAAAACTGTTTGTGAGGAGTTAAACATTGGAAAAGCTGATTTATGCCAAATCATAAAGGATGATCCATTAAAGCTAATTAGTTTGGCTTCAAAACTGGAACAGAAGAGCAATGAACAGGTATTCTGTCATGACCCACGAAATTATTTGGAAAAAACTGCTTTCTTGCTGAAACTGGGGTATACTGAGAACTCTGAAGAGATGGCAAAAGCATTAAAAATGTTTCGAGGGAGAGGTGATCAATTACAAGAGAGATTTGATTGCCTAGTAGAAGCTGGTTTGGATTACAACAGTGTAATTGAAATGATAAAACGAGCTCCTATGATTCTAAACCAGAAAAGAAGTATAATTCAAAAGAAGATTGATTTTGTAAAAAAATTAGATTACCCAGTAGAATGTCTTGTGAGATTCCCATCATACTTTTGTCATGATTTGGAGAAAATTATTGAAAGATTTTCAATGTATGAGTGGCTGAAGGAGAGGAATGCGGTTAATCCTGATTTAACCTTGAGCACCATAGTTTCCTCTAATGATAAACGGTTTGTAAAATACTTTGTGAATATGCATCCTCAAGGTCCAACCATCTGGAATAGTCTAAAAAGGTTATCAAACAAAGATAAGAAATAA 1728 0.3709 MISQLNLNGFFLFNPSSMLQKPVSRRQNPSSLSLKVRSFRGSEPPHVPSFSPVKPLRVPRHVRTEAQVVLMDYLHSTRGYSFLDAEYISKNSPRFVESLVSKIGGEEGDVSRSLRKLLRYNPVNEFEPFFESLGISQSELPLVLPPDMIFLSDDHVLLDCFHALCNYGVPRNRMGKIYKQAKEIFWYDSGLLLSKFQAFENLGLSKSAVIKLVVCCPSLLVGAMDCEFVDVIGWLKKIGAESDWIMNCMSYSRTYSWKKMLETIQFLHKVGYSEKHMHNLFKENPRLLLEGFGKKLFLFLGRSLKLGLEMNVICSYFIKYPYIMSSKSAKNLIRVIGFLYIIGMGKDDIANILSNHMHLLCKHSWKGHKTVCEELNIGKADLCQIIKDDPLKLISLASKLEQKSNEQVFCHDPRNYLEKTAFLLKLGYTENSEEMAKALKMFRGRGDQLQERFDCLVEAGLDYNSVIEMIKRAPMILNQKRSIIQKKIDFVKKLDYPVECLVRFPSYFCHDLEKIIERFSMYEWLKERNAVNPDLTLSTIVSSNDKRFVKYFVNMHPQGPTIWNSLKRLSNKDKK. 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00763 575 SMART mt_12 432 462 IPR003690 GO:0003690|GO:0006355
Seca8g00763 575 SMART mt_12 399 429 IPR003690 GO:0003690|GO:0006355
Seca8g00763 575 SMART mt_12 467 497 IPR003690 GO:0003690|GO:0006355
Seca8g00763 575 SMART mt_12 210 241 IPR003690 GO:0003690|GO:0006355
Seca8g00763 575 SMART mt_12 314 345 IPR003690 GO:0003690|GO:0006355
Seca8g00763 575 SMART mt_12 498 531 IPR003690 GO:0003690|GO:0006355
Seca8g00763 575 FunFam mTERF family protein 104 254 - -
Seca8g00763 575 PANTHER CGI-12 PROTEIN-RELATED 69 221 IPR003690 GO:0003690|GO:0006355
Seca8g00763 575 Gene3D Transcription termination factor 3, mitochondrial 298 564 IPR038538 -
Seca8g00763 575 Gene3D Transcription termination factor 3, mitochondrial 141 297 IPR038538 -
Seca8g00763 575 Pfam mTERF 441 548 IPR003690 GO:0003690|GO:0006355
Seca8g00763 575 Pfam mTERF 264 494 IPR003690 GO:0003690|GO:0006355
Seca8g00763 575 Pfam mTERF 125 224 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00763 Seca-Chr8 9818950 9820677 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca8g00763 mTERF 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00763 - - gmx:100803162 801.586