Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00752 ATGCAGACACAGAACCAACATCTGTTGCAGCAGGTGACTGAGAGGGATGACTATAATATTAAGCTTGTATCAGAAAGCGTAAAGACAAAACAGACACATAGCACTTTACTGTCTGAGAAACAGGCCTTAGCAAAGCAGCTTCAACAAATTAATTCTTCTATAGAAAATTCAAAGACAAGGATTGCACACAGTGAAGAGCAGATGAAAGGTATTCTGTCAGAAGCCATTAAATGTGTTCAAGATGAAAAATACTGTGCAGTCAGCTTGGAATTTGCAAAGTGGGAATTGGCTGATTCTGAGAAAGAGTTGAAATGGCTCAAGTCTGCTGCTTCATCTTCAGACAAAGAATATGATCAAGTTCAGAAAGATATAGAAGCTATTGAAACGGAATTGGATAGTGAAAGGAGTTCACGGGAGAAGCTTGAGGAAGAACTAAGGGAATTGAACAGCAAAATAGCTGAGCTGAGTTCTGAAACTGGAGAAACCACAGTACAAAAACTTGAAGAAGAAATAAGAGTTTGCAAGAACATGATCAAGTGTACTGTCTGTTCTGATCGTCCAAAGGAGGTTGTGATTGTCAAGTGCTATCATCTGTTCTGCAATCCTTGCATACAAAGAAATCTTGAGCTGCGCCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTTCGGTTTGTTAAAATATAA 699 0.3948 MQTQNQHLLQQVTERDDYNIKLVSESVKTKQTHSTLLSEKQALAKQLQQINSSIENSKTRIAHSEEQMKGILSEAIKCVQDEKYCAVSLEFAKWELADSEKELKWLKSAASSSDKEYDQVQKDIEAIETELDSERSSREKLEEELRELNSKIAELSSETGETTVQKLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00752 232 SMART ring_2 180 218 IPR001841 -
Seca8g00752 232 Coils Coil 40 67 - -
Seca8g00752 232 Coils Coil 110 158 - -
Seca8g00752 232 ProSitePatterns Zinc finger RING-type signature. 195 204 IPR017907 -
Seca8g00752 232 ProSiteProfiles Zinc finger RING-type profile. 180 218 IPR001841 -
Seca8g00752 232 SUPERFAMILY RING/U-box 179 224 - -
Seca8g00752 232 CDD RING-HC_Bre1-like 172 228 - -
Seca8g00752 232 Pfam Zinc finger, C3HC4 type (RING finger) 179 221 - -
Seca8g00752 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 231 IPR013083 -
Seca8g00752 232 PANTHER RING FINGER PROTEIN-RELATED 1 232 IPR013956 GO:0004842|GO:0010390
Seca8g00752 232 Gene3D - 19 137 - -
Seca8g00752 232 SUPERFAMILY Tropomyosin 40 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00752 Seca-Chr8 9738803 9741811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00752 153 227 RAD5 or RAD16-like Gene Family AT5G05130 27.381 2.51e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00752 K10696 - gmx:100796610 390.963