Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00750 ATGCGACGAGGTAGAGCCGCAGATCCAACCGTGGAAAACGAAGCCATCAGAAGCCCGGCGAAGGAAACGCGATTCCGCGGCGTTAGGAAGCGTCCGTGGGGACGATTCGCCGCGGAGATCAGAGATCCGTGGAAGAAAGCCCGTGTCTGGCTTGGTACCTTCGACTCCGCGGAAGACGCGGCCCGGGCCTACGATGCGGCGGCCCGGTCCTTCCGCGGGCCCAAGGCCAAAACAAACTTCCCCATCCCTGACATCGACATCACAAACTCTCATCAGATTCCTCTCTATCATCAACAAGCCCATGGGTTTTCCAAGTTCGACCCTGTTCAGGTGAACCGGCCCACCACAAGCGGCATGAGCAGCACCGTGGAGTCTTTCAGCGGGCCTAGGGTTCCTTCCTCTTCCACTACCGCCCCTAGGGTTCGCAGGCCTGTTAACCCTGTTCCTCTCGATGACTGTCACAGCGATTGCGATTCCTCTTCCTCTGTAATCGACGATCAGGATTGCGTTCTCACATCTTCCTTCCGCAAACCACTCCCTTTCGATCTCAACCTCCCTCCTCCCTCCGCCGCTGACTTCGATTTCACCGCCGACGAGCTCCGAGCCACCGCCTTGTGCCTCTGA 624 0.5881 MRRGRAADPTVENEAIRSPAKETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPIPDIDITNSHQIPLYHQQAHGFSKFDPVQVNRPTTSGMSSTVESFSGPRVPSSSTTAPRVRRPVNPVPLDDCHSDCDSSSSVIDDQDCVLTSSFRKPLPFDLNLPPPSAADFDFTADELRATALCL. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00750 207 MobiDBLite consensus disorder prediction 116 146 - -
Seca8g00750 207 MobiDBLite consensus disorder prediction 116 141 - -
Seca8g00750 207 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Seca8g00750 207 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Seca8g00750 207 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Seca8g00750 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 170 - -
Seca8g00750 207 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Seca8g00750 207 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Seca8g00750 207 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Seca8g00750 207 FunFam Ethylene-responsive transcription factor 2 22 82 - -
Seca8g00750 207 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
Seca8g00750 207 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00750 Seca-Chr8 9722618 9723241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00750 1 207 AP2-EREBP Transcription Factor Family AT1G50640 50.855 5.03e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca8g00750 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00750 K09286 - gmx:100795557 246.128