Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g00749 | ATGTGTGGTTATGGAAGTAACTGTCGATATAATCACCCTGCTCATGTTTCACTTGTTCCTCAATATGGTGAAGAACTCCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGATCCTGTATTATTCAATACTCTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGATCTTGTAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAGCATGCTTCCTTTGGAGCTTACCCAATGGCTGGATCTCCTGCCTCAACAATGATTCCTACATCAGGTTTACCATATGTTGGTAACTTTCCTGCATGGACAGTATCAAGAATGTCATATTTATCTGGGCAGGGCCTTCAATCTTATGTTCCTCCTCTTCTGTCATCTTCACAAGGCATTATACCTGCGCAGAACTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCTACTGGTTTTCTTGGATCTAATCTTGTCTACGACTACATGAATCCAAACGAGTCATTTTCTGGTGGGCAGGCAATAAGCTCAACCCTCCCAGATAGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCATCCAAAAGAAAGAATAGCCCAATCACCAATAAATCCACTTGGCCTTCCTTTGAGACCTGGGCAAGCCATATGCTCTTATTACAGAATCTATGGAATATGCAAATTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCGCCTGCTCTATCTGTACTTAACTCATCTATCATTAGTAATCCAAGGGAGTTGTCAACTGTTAAACCACCTGAGACATCTCCATCTAAATTATCAAGTGATAAGCTTAAGCACTTTGATACAAAAGCTACTACAGAGGATTCACCCAAACAAGCTGATACTACTTCAAATTCTGAGTCTTTACATGAATAA | 1062 | 0.4134 | MCGYGSNCRYNHPAHVSLVPQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGADPVLFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASFGAYPMAGSPASTMIPTSGLPYVGNFPAWTVSRMSYLSGQGLQSYVPPLLSSSQGIIPAQNWNNYMGNMNPAMPTGFLGSNLVYDYMNPNESFSGGQAISSTLPDRPDQPECRYFMSTGTCKYGSDCKFHHPKERIAQSPINPLGLPLRPGQAICSYYRIYGICKFGPTCKFDHPVLTIPQNYGLTSPALSVLNSSIISNPRELSTVKPPETSPSKLSSDKLKHFDTKATTEDSPKQADTTSNSESLHE. | 354 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g00749 | 353 | SUPERFAMILY | CCCH zinc finger | 73 | 102 | IPR036855 | GO:0046872 | |
Seca8g00749 | 353 | MobiDBLite | consensus disorder prediction | 307 | 353 | - | - | |
Seca8g00749 | 353 | PANTHER | PROTEIN PHOSPHATASE RELATED | 1 | 305 | - | - | |
Seca8g00749 | 353 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1 | 15 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | ProSiteProfiles | Zinc finger C3H1-type profile. | 253 | 281 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | MobiDBLite | consensus disorder prediction | 338 | 353 | - | - | |
Seca8g00749 | 353 | ProSiteProfiles | Zinc finger C3H1-type profile. | 74 | 102 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 78 | 101 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 212 | 237 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 32 | 56 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 255 | 279 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | Gene3D | - | 60 | 109 | - | - | |
Seca8g00749 | 353 | Gene3D | - | 208 | 287 | - | - | |
Seca8g00749 | 353 | Gene3D | - | 1 | 59 | - | - | |
Seca8g00749 | 353 | ProSiteProfiles | Zinc finger C3H1-type profile. | 29 | 57 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | SMART | c3hfinal6 | 253 | 280 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | SMART | c3hfinal6 | 29 | 56 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | SMART | c3hfinal6 | 210 | 237 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | SMART | c3hfinal6 | 76 | 101 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | SUPERFAMILY | CCCH zinc finger | 33 | 57 | IPR036855 | GO:0046872 | |
Seca8g00749 | 353 | MobiDBLite | consensus disorder prediction | 321 | 337 | - | - | |
Seca8g00749 | 353 | SUPERFAMILY | CCCH zinc finger | 214 | 239 | IPR036855 | GO:0046872 | |
Seca8g00749 | 353 | ProSiteProfiles | Zinc finger C3H1-type profile. | 210 | 238 | IPR000571 | GO:0046872 | |
Seca8g00749 | 353 | SUPERFAMILY | CCCH zinc finger | 252 | 279 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g00749 | Seca-Chr8 | 9694648 | 9699053 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g00749 | 1 | 349 | C3H Transcription Factor Family | AT1G04990 | 49.157 | 2.88e-103 | 308 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Seca8g00749 | zf-CCCH | 8.9e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g00749 | - | - | vra:106765262 | 632.869 |