Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00749 ATGTGTGGTTATGGAAGTAACTGTCGATATAATCACCCTGCTCATGTTTCACTTGTTCCTCAATATGGTGAAGAACTCCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACAGGCGAGGTGCTGATCCTGTATTATTCAATACTCTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGATCTTGTAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAGCATGCTTCCTTTGGAGCTTACCCAATGGCTGGATCTCCTGCCTCAACAATGATTCCTACATCAGGTTTACCATATGTTGGTAACTTTCCTGCATGGACAGTATCAAGAATGTCATATTTATCTGGGCAGGGCCTTCAATCTTATGTTCCTCCTCTTCTGTCATCTTCACAAGGCATTATACCTGCGCAGAACTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCTACTGGTTTTCTTGGATCTAATCTTGTCTACGACTACATGAATCCAAACGAGTCATTTTCTGGTGGGCAGGCAATAAGCTCAACCCTCCCAGATAGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCATCCAAAAGAAAGAATAGCCCAATCACCAATAAATCCACTTGGCCTTCCTTTGAGACCTGGGCAAGCCATATGCTCTTATTACAGAATCTATGGAATATGCAAATTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCGCCTGCTCTATCTGTACTTAACTCATCTATCATTAGTAATCCAAGGGAGTTGTCAACTGTTAAACCACCTGAGACATCTCCATCTAAATTATCAAGTGATAAGCTTAAGCACTTTGATACAAAAGCTACTACAGAGGATTCACCCAAACAAGCTGATACTACTTCAAATTCTGAGTCTTTACATGAATAA 1062 0.4134 MCGYGSNCRYNHPAHVSLVPQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGADPVLFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASFGAYPMAGSPASTMIPTSGLPYVGNFPAWTVSRMSYLSGQGLQSYVPPLLSSSQGIIPAQNWNNYMGNMNPAMPTGFLGSNLVYDYMNPNESFSGGQAISSTLPDRPDQPECRYFMSTGTCKYGSDCKFHHPKERIAQSPINPLGLPLRPGQAICSYYRIYGICKFGPTCKFDHPVLTIPQNYGLTSPALSVLNSSIISNPRELSTVKPPETSPSKLSSDKLKHFDTKATTEDSPKQADTTSNSESLHE. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00749 353 SUPERFAMILY CCCH zinc finger 73 102 IPR036855 GO:0046872
Seca8g00749 353 MobiDBLite consensus disorder prediction 307 353 - -
Seca8g00749 353 PANTHER PROTEIN PHOSPHATASE RELATED 1 305 - -
Seca8g00749 353 ProSiteProfiles Zinc finger C3H1-type profile. 1 15 IPR000571 GO:0046872
Seca8g00749 353 ProSiteProfiles Zinc finger C3H1-type profile. 253 281 IPR000571 GO:0046872
Seca8g00749 353 MobiDBLite consensus disorder prediction 338 353 - -
Seca8g00749 353 ProSiteProfiles Zinc finger C3H1-type profile. 74 102 IPR000571 GO:0046872
Seca8g00749 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 78 101 IPR000571 GO:0046872
Seca8g00749 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 212 237 IPR000571 GO:0046872
Seca8g00749 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 56 IPR000571 GO:0046872
Seca8g00749 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 279 IPR000571 GO:0046872
Seca8g00749 353 Gene3D - 60 109 - -
Seca8g00749 353 Gene3D - 208 287 - -
Seca8g00749 353 Gene3D - 1 59 - -
Seca8g00749 353 ProSiteProfiles Zinc finger C3H1-type profile. 29 57 IPR000571 GO:0046872
Seca8g00749 353 SMART c3hfinal6 253 280 IPR000571 GO:0046872
Seca8g00749 353 SMART c3hfinal6 29 56 IPR000571 GO:0046872
Seca8g00749 353 SMART c3hfinal6 210 237 IPR000571 GO:0046872
Seca8g00749 353 SMART c3hfinal6 76 101 IPR000571 GO:0046872
Seca8g00749 353 SUPERFAMILY CCCH zinc finger 33 57 IPR036855 GO:0046872
Seca8g00749 353 MobiDBLite consensus disorder prediction 321 337 - -
Seca8g00749 353 SUPERFAMILY CCCH zinc finger 214 239 IPR036855 GO:0046872
Seca8g00749 353 ProSiteProfiles Zinc finger C3H1-type profile. 210 238 IPR000571 GO:0046872
Seca8g00749 353 SUPERFAMILY CCCH zinc finger 252 279 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00749 Seca-Chr8 9694648 9699053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00749 1 349 C3H Transcription Factor Family AT1G04990 49.157 2.88e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g00749 zf-CCCH 8.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00749 - - vra:106765262 632.869